Factsheet for Bra006311.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78640	Canola	cytosol	95.15	96.13
Bra006310.1-P	Field mustard	cytosol	71.94	76.42
Bra006312.1-P	Field mustard	cytosol	73.98	72.5
Bra006309.1-P	Field mustard	cytosol	68.11	67.42
AT4G22390.1	Thale cress	cytosol	64.03	62.44
Bra020847.1-P	Field mustard	cytosol	61.48	59.65
Bra018485.1-P	Field mustard	cytosol	58.67	55.96
Bra006313.1-P	Field mustard	plasma membrane	77.04	35.57
KRH36548	Soybean	cytosol, plastid	30.87	30.87
KRH11533	Soybean	cytosol	29.85	29.7
Solyc01g008660.2.1	Tomato	cytosol	24.49	27.91
KRH51164	Soybean	cytosol	27.3	27.79
KRH01989	Soybean	cytosol	27.3	27.3
Bra001187.1-P	Field mustard	cytosol	16.33	24.15
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.22	23.28
Bra014991.1-P	Field mustard	cytosol	19.13	20.27

Protein Annotations

EnsemblPlants:Bra006311.1	EnsemblPlants:Bra006311.1-P	EnsemblPlantsGene:Bra006311	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646
PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253FC24	UniProt:M4CQ22
MapMan:35.1	:	:	:	:	:

Description

AT4G22390 (E=5e-140) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:2952629..2953807

Molecular Weight (calculated)

45272.1 Da

IEP (calculated)

8.365

GRAVY (calculated)

-0.073

Length

392 amino acids

Sequence
(BLAST)

001: MANLPMDIVN DVFLRLPATT LVRCRVLSKP CFSLIDSPDF VASHLKRTLE TEEHLMILLR SPRLLRTVYL DAPDKISDVE HPLQTDGSTE VFGSVNGLVG
101: LTNSPVDLAL FNPSTRKIHR LPIEPIDFTE HSISRENVFY GLGYDSVSDD YKVVRMVQSK DRGIERFGYP FEVKVFSLKR NRWKRIREVQ ILFIHFYYRF
201: LYPSGNGVLA GNSLHWILPR RQGLIAGNRI IRFDLASDDL GVLSFPQELY FEDNMEMGVL DGCLCFMCYS MFSHVEVWIL REYQGKWSKF ITVESYNFIR
301: PLIYSKDRSK ILMEINGEKL VWYDLASKSF ETFVIKGCEG LQCSAEIVVS SLVLGCKGDP HRAREKKMLQ KGSKRWGYAH LYNVLSYLFL IP

Best Arabidopsis Sequence Match ( AT4G22390.1 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRW DGFLSKGFKL
401: KL

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.