CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01989	Soybean	cytosol	90.39	88.78
KRH36548	Soybean	cytosol, plastid	56.1	55.1
KRH11533	Soybean	cytosol	55.84	54.57
Solyc01g008660.2.1	Tomato	cytosol	28.31	31.69
AT4G12560.2	Thale cress	cytosol	33.51	31.23
CDX78638	Canola	cytosol	30.39	29.92
Bra018485.1-P	Field mustard	cytosol	31.69	29.68
CDX76370	Canola	cytosol	31.17	29.48
KRH35044	Soybean	cytosol, extracellular, golgi	27.27	29.25
Bra006309.1-P	Field mustard	cytosol	29.09	28.28
Bra006310.1-P	Field mustard	cytosol	26.75	27.91
CDY67179	Canola	cytosol	30.91	27.8
Bra020847.1-P	Field mustard	cytosol	29.09	27.72
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	13.51	27.51
Bra006311.1-P	Field mustard	cytosol	27.79	27.3
KRH11341	Soybean	cytosol, plastid	27.79	27.23
CDX97333	Canola	cytosol	23.64	27.16
KRH11340	Soybean	cytosol, peroxisome, plastid	27.01	27.15
AT4G22390.1	Thale cress	cytosol	28.31	27.11
CDX78640	Canola	cytosol	27.01	26.8
CDX78641	Canola	cytosol	27.27	26.25
CDX78639	Canola	cytosol	26.49	26.15
CDX78642	Canola	cytosol	27.01	26.07
Bra006312.1-P	Field mustard	cytosol	26.75	25.75
KRH20939	Soybean	cytosol, mitochondrion	27.01	25.62
CDX70626	Canola	cytosol	27.79	24.77
KRH72048	Soybean	cytosol	22.34	24.36
CDX78643	Canola	cytosol	26.23	23.27
KRH35047	Soybean	cytosol, peroxisome, plastid	23.38	22.9
Bra006313.1-P	Field mustard	plasma membrane	27.01	12.25
CDX78644	Canola	plasma membrane	1.56	1.39

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100789763	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02004729	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_07G265800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	UniProt:I1KNJ2	InterPro:IPR001810	EnsemblPlants:KRH51164	ProteinID:KRH51164	ProteinID:KRH51164.1
ProteinID:KRH51165.1	ProteinID:KRH51166.1	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF34	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000233908D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:43967525..43970385

Molecular Weight (calculated)

43957.2 Da

IEP (calculated)

8.816

GRAVY (calculated)

-0.170

Length

385 amino acids

Sequence
(BLAST)

001: MMANLPVEVV TEILSRLPVK SVIRLRSTCK WWRSIIDSRH FVLFHLNKSH SSLILRHRSH LYSLDLKSPE QNPVELSHPL MCYSNSIKVL GSSNGLLCIS
101: NVADDIALWN PFLRKHRILP ADRFHRPQSS LFAARVYGFG HHSPSNDYKL LSITYFVDLQ KRTFDSQVQL YTLKSDSWKN LPSMPYALCC ARTMGVFVSG
201: SLHWLVTRKL QPHEPDLIVS FDLTRETFHE VPLPVTVNGD FDMQVALLGG CLCVVEHRGT GFDVWVMRVY GSRNSWEKLF TLLENNDHHE MMGSGKLKYV
301: RPLALDGDRV LFEHNRSKLC WYNLKTGDVS CVKITAAIGN TIEGTVCVES LVPPTLLNLR DESQSQEKNG KKRDDFLSQG FKLTL

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.