CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11340	Soybean	cytosol, peroxisome, plastid	90.64	96.08
KRH11341	Soybean	cytosol, plastid	39.41	40.71
KRH35044	Soybean	cytosol, extracellular, golgi	34.24	38.72
Solyc09g091710.1.1	Tomato	nucleus	36.95	37.31
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.74	37.03
PGSC0003DMT400076275	Potato	nucleus	36.21	36.57
KRH35047	Soybean	cytosol, peroxisome, plastid	34.98	36.13
Solyc01g067030.2.1	Tomato	extracellular	32.76	36.04
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	28.82	35.67
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	29.31	35.52
PGSC0003DMT400080382	Potato	golgi	32.76	35.37
Solyc02g033040.2.1	Tomato	nucleus	29.31	35.0
VIT_18s0041g01100.t01	Wine grape	cytosol	20.94	34.98
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	32.51	34.92
Solyc10g052710.1.1	Tomato	cytosol	32.51	34.55
PGSC0003DMT400055337	Potato	plastid	34.48	34.48
PGSC0003DMT400035091	Potato	mitochondrion	33.25	34.44
Solyc10g008450.1.1	Tomato	extracellular, vacuole	29.31	34.1
Solyc09g091690.1.1	Tomato	cytosol	32.51	34.02
PGSC0003DMT400076216	Potato	cytosol	32.51	33.93
PGSC0003DMT400006240	Potato	mitochondrion	27.34	33.84
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	33.25	33.75
PGSC0003DMT400096925	Potato	cytosol	20.94	33.73
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	30.54	33.51
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	30.54	33.51
KRH72048	Soybean	cytosol	29.06	33.43
PGSC0003DMT400016504	Potato	cytosol	31.77	33.42
PGSC0003DMT400080239	Potato	cytosol, plastid	26.11	33.23
Solyc09g091220.1.1	Tomato	cytosol	32.51	33.17
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	28.82	33.14
PGSC0003DMT400095263	Potato	cytosol	22.17	33.09
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	31.03	33.07
VIT_18s0041g01090.t01	Wine grape	cytosol	32.27	33.0
PGSC0003DMT400034123	Potato	golgi	29.8	32.97
PGSC0003DMT400080369	Potato	nucleus	32.27	32.83
PGSC0003DMT400009785	Potato	cytosol	30.54	32.72
Solyc10g068340.1.1	Tomato	cytosol	20.94	32.69
PGSC0003DMT400092235	Potato	cytosol	26.6	32.63
PGSC0003DMT400096151	Potato	cytosol	31.77	32.41
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	29.56	32.26
Solyc05g007530.1.1	Tomato	cytosol	29.31	31.99
PGSC0003DMT400059327	Potato	cytosol	29.06	31.98
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	29.06	31.81
PGSC0003DMT400009709	Potato	cytosol	29.56	31.75
PGSC0003DMT400085500	Potato	cytosol	29.8	31.59
Solyc10g075010.1.1	Tomato	extracellular	27.59	31.55
PGSC0003DMT400031977	Potato	cytosol	30.3	30.98
PGSC0003DMT400090333	Potato	cytosol	23.65	30.97
PGSC0003DMT400067303	Potato	extracellular	27.83	30.87
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	30.79	30.86
PGSC0003DMT400090382	Potato	cytosol	29.06	30.73
PGSC0003DMT400076284	Potato	cytosol	32.02	30.66
CDX77477	Canola	cytosol	27.83	30.54
AT3G23880.1	Thale cress	cytosol	27.34	30.49
PGSC0003DMT400076282	Potato	nucleus	11.82	30.38
PGSC0003DMT400094202	Potato	cytosol	21.43	30.31
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	28.57	30.05
Solyc05g007400.1.1	Tomato	cytosol	27.83	29.74
Bra014991.1-P	Field mustard	cytosol	27.09	29.73
PGSC0003DMT400076274	Potato	cytosol	28.33	29.72
PGSC0003DMT400030295	Potato	cytosol	14.29	29.29
PGSC0003DMT400059330	Potato	extracellular	26.85	28.84
PGSC0003DMT400025788	Potato	cytosol	27.83	28.83
Solyc09g072910.1.1	Tomato	plasma membrane	30.79	28.6
PGSC0003DMT400045556	Potato	cytosol	32.02	28.14
PGSC0003DMT400093810	Potato	plastid	18.97	27.5
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	29.06	27.25
KRH51164	Soybean	cytosol	25.62	27.01
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	25.37	26.48
PGSC0003DMT400015653	Potato	cytosol, plastid	32.02	26.42
KRH01989	Soybean	cytosol	25.37	26.28
PGSC0003DMT400059329	Potato	vacuole	25.86	26.18
KRH11533	Soybean	cytosol	25.37	26.14
KRH36548	Soybean	cytosol, plastid	25.12	26.02
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	25.62	25.74
Solyc05g007360.1.1	Tomato	extracellular	25.37	25.69
PGSC0003DMT400080292	Potato	cytosol	12.07	24.75
PGSC0003DMT400097507	Potato	cytosol	14.29	24.37
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	16.5	24.28
PGSC0003DMT400053922	Potato	extracellular, golgi	24.88	24.16
PGSC0003DMT400088797	Potato	cytosol	14.29	23.58
PGSC0003DMT400053926	Potato	cytosol	14.78	22.81
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	10.1	22.78
PGSC0003DMT400059334	Potato	plastid	18.97	21.39
PGSC0003DMT400080293	Potato	nucleus	10.59	16.93
CDX85142	Canola	cytosol	27.59	13.64

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100815072	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02008330	EMBL:BT094543	UniProt:C6TAK5
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_13G211000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:IPR001810	EnsemblPlants:KRH20939	ProteinID:KRH20939	ProteinID:KRH20939.1	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0001B16250

Description

hypothetical protein

Coordinates

chr13:+:32478631..32481186

Molecular Weight (calculated)

46549.0 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.234

Length

406 amino acids

Sequence
(BLAST)

001: MSSQGYLHRI GFTRKRERLI NPMDRTSPLP PSSVPKQQPM SESLPLPFLP DELVVEILSR LPVKSLLQFR CVCKSWMSLI SDPYFMKKHL HLSSRCTHFT
101: HHRIILSATT AEFHLKSCSL SSLFNNPSST VCDDLNYPVK NKFRHDGIVG SCNGLLCFAI KGDCVLLWNP SIRVSKKSPP LGNNWRPGCF TAFGLGYDHV
201: NEDYKVVAVF CDPSEYFIEC KVKVYSMATN SWRKIQDFPH GFLPFQNSGK FVSGTLNWAA NHSIGPSSFW VIVSLDLHKE TYREVLPPDY EKEDCSTPSL
301: GVLQGCLCMN YDYKKTHFVV WMMKDYGVRE SWVKLVSIPY VPNPEDFSYS GPYYISENGK VLLMFEFDLI LYDPRNNSFK YPKIESGKGW FDAEVYVETL
401: VSPMKH

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.