Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g052710.1.1 | Tomato | cytosol | 81.27 | 70.42 |
| PGSC0003DMT400076282 | Potato | nucleus | 21.15 | 44.3 |
| PGSC0003DMT400076275 | Potato | nucleus | 46.53 | 38.31 |
| PGSC0003DMT400097507 | Potato | cytosol | 27.49 | 38.24 |
| PGSC0003DMT400080369 | Potato | nucleus | 45.32 | 37.59 |
| PGSC0003DMT400009785 | Potato | cytosol | 42.9 | 37.47 |
| PGSC0003DMT400096151 | Potato | cytosol | 44.41 | 36.93 |
| PGSC0003DMT400090333 | Potato | cytosol | 34.44 | 36.77 |
| PGSC0003DMT400094202 | Potato | cytosol | 31.72 | 36.59 |
| PGSC0003DMT400009709 | Potato | cytosol | 41.69 | 36.51 |
| PGSC0003DMT400031977 | Potato | cytosol | 43.2 | 36.02 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 35.65 | 35.98 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 42.3 | 35.0 |
| PGSC0003DMT400055337 | Potato | plastid | 42.9 | 34.98 |
| PGSC0003DMT400080382 | Potato | golgi | 39.58 | 34.84 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 32.93 | 34.17 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 35.65 | 33.43 |
| PGSC0003DMT400085500 | Potato | cytosol | 38.67 | 33.42 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 38.07 | 33.33 |
| PGSC0003DMT400076284 | Potato | cytosol | 42.6 | 33.25 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 38.67 | 32.65 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 32.33 | 32.62 |
| PGSC0003DMT400016504 | Potato | cytosol | 37.76 | 32.38 |
| PGSC0003DMT400095263 | Potato | cytosol | 26.28 | 31.99 |
| PGSC0003DMT400080292 | Potato | cytosol | 19.03 | 31.82 |
| PGSC0003DMT400093810 | Potato | plastid | 26.89 | 31.79 |
| PGSC0003DMT400088797 | Potato | cytosol | 23.57 | 31.71 |
| PGSC0003DMT400045556 | Potato | cytosol | 44.11 | 31.6 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 34.44 | 30.81 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 25.08 | 30.07 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 16.01 | 29.44 |
| PGSC0003DMT400090382 | Potato | cytosol | 34.14 | 29.43 |
| PGSC0003DMT400096925 | Potato | cytosol | 22.36 | 29.37 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 32.63 | 29.03 |
| PGSC0003DMT400059327 | Potato | cytosol | 32.33 | 29.0 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 33.23 | 28.72 |
| PGSC0003DMT400053926 | Potato | cytosol | 22.66 | 28.52 |
| PGSC0003DMT400067303 | Potato | extracellular | 31.12 | 28.14 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 28.4 | 28.06 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 20.24 | 27.57 |
| KRH11341 | Soybean | cytosol, plastid | 32.02 | 26.97 |
| PGSC0003DMT400076216 | Potato | cytosol | 31.42 | 26.74 |
| KRH20939 | Soybean | cytosol, mitochondrion | 32.63 | 26.6 |
| PGSC0003DMT400025788 | Potato | cytosol | 31.42 | 26.53 |
| PGSC0003DMT400034123 | Potato | golgi | 29.31 | 26.43 |
| PGSC0003DMT400076274 | Potato | cytosol | 30.82 | 26.36 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 38.97 | 26.22 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 29.0 | 25.95 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 28.7 | 25.68 |
| PGSC0003DMT400059330 | Potato | extracellular | 29.0 | 25.4 |
| PGSC0003DMT400059329 | Potato | vacuole | 30.21 | 24.94 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 26.89 | 24.79 |
| PGSC0003DMT400016096 | Potato | cytosol | 15.41 | 24.64 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 30.21 | 23.92 |
| PGSC0003DMT400012000 | Potato | plastid | 26.59 | 23.78 |
| PGSC0003DMT400030295 | Potato | cytosol | 13.9 | 23.23 |
| PGSC0003DMT400058829 | Potato | cytosol | 25.08 | 22.8 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.59 | 22.17 |
| PGSC0003DMT400059334 | Potato | plastid | 23.87 | 21.94 |
| PGSC0003DMT400016099 | Potato | cytosol | 24.17 | 21.74 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 25.68 | 21.63 |
| AT3G23880.1 | Thale cress | cytosol | 23.57 | 21.43 |
| Bra014991.1-P | Field mustard | cytosol | 23.87 | 21.35 |
| PGSC0003DMT400016057 | Potato | cytosol | 23.87 | 21.18 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 12.08 | 21.16 |
| KRH72048 | Soybean | cytosol | 22.05 | 20.68 |
| PGSC0003DMT400046369 | Potato | cytosol | 25.08 | 20.54 |
| PGSC0003DMT400080293 | Potato | nucleus | 14.2 | 18.5 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092235 | EnsemblPlantsGene:PGSC0003DMG400041806 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:Gal_Oxase/kelch_b-propeller | PANTHER:PTHR44355 |
| PANTHER:PTHR44355:SF1 | PFAM:PF07734 | PGSC:PGSC0003DMG400041806 | SUPFAM:SSF50965 | TIGRFAMs:TIGR01640 | UniParc:UPI0002961E07 |
| UniProt:M1DPD4 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041806]
Coordinates
chr10:-:44737370..44744170
Molecular Weight (calculated)
38139.7 Da
IEP (calculated)
8.694
GRAVY (calculated)
-0.332
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEVEEGFH RHPKWKKPTN CVEFPSILPP ELITEIISRL PVKSLLKFRF LPVGSINGLI CLAHGYHSPK HLFIWNPSIR KYKKLPNSRC KFRYDACMYG
101: FGYDEFRDDY KVVGIFCIYG SSLHIDFKIY SLKGDSWRKI HYSQDGMSFS RRSVFVNGKL HWTTHSLDQY VYKGGGIVSF SLADENWGKV EEPCYGGKES
201: ISELGVFGNN LCGFSHDLAI GVDVWVMKDY GITESWTKMC TITYPKLERY LYFPSVFLSN NGDVLVGYGS TFIIYNPKDD SLKYPKVINY NEWRIGEIYI
301: ESLISPLSTE GLRSKQKQCV KQLKSSQSSD K
101: FGYDEFRDDY KVVGIFCIYG SSLHIDFKIY SLKGDSWRKI HYSQDGMSFS RRSVFVNGKL HWTTHSLDQY VYKGGGIVSF SLADENWGKV EEPCYGGKES
201: ISELGVFGNN LCGFSHDLAI GVDVWVMKDY GITESWTKMC TITYPKLERY LYFPSVFLSN NGDVLVGYGS TFIIYNPKDD SLKYPKVINY NEWRIGEIYI
301: ESLISPLSTE GLRSKQKQCV KQLKSSQSSD K
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.