Factsheet for PGSC0003DMT400046369

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008660.2.1	Tomato	cytosol	77.23	90.7
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	24.26	29.88
PGSC0003DMT400080382	Potato	golgi	27.23	29.26
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	26.73	29.19
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	13.61	29.1
PGSC0003DMT400012000	Potato	plastid	26.49	28.92
PGSC0003DMT400095263	Potato	cytosol	19.31	28.68
PGSC0003DMT400076216	Potato	cytosol	27.48	28.53
PGSC0003DMT400096151	Potato	cytosol	27.72	28.14
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	23.02	27.76
PGSC0003DMT400009785	Potato	cytosol	25.74	27.44
PGSC0003DMT400009709	Potato	cytosol	25.5	27.25
PGSC0003DMT400076275	Potato	nucleus	26.73	26.87
PGSC0003DMT400080239	Potato	cytosol, plastid	21.04	26.65
PGSC0003DMT400096925	Potato	cytosol	16.58	26.59
PGSC0003DMT400034123	Potato	golgi	24.01	26.43
PGSC0003DMT400016504	Potato	cytosol	25.25	26.42
PGSC0003DMT400006240	Potato	mitochondrion	21.29	26.22
PGSC0003DMT400076274	Potato	cytosol	25.0	26.1
PGSC0003DMT400025788	Potato	cytosol	25.25	26.02
PGSC0003DMT400031977	Potato	cytosol	25.5	25.94
PGSC0003DMT400076284	Potato	cytosol	27.23	25.94
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	24.26	25.93
PGSC0003DMT400055337	Potato	plastid	25.74	25.62
PGSC0003DMT400085500	Potato	cytosol	24.26	25.59
PGSC0003DMT400016057	Potato	cytosol	23.51	25.47
PGSC0003DMT400080369	Potato	nucleus	25.0	25.31
PGSC0003DMT400058829	Potato	cytosol	22.77	25.27
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	22.03	25.21
PGSC0003DMT400092235	Potato	cytosol	20.54	25.08
PGSC0003DMT400035091	Potato	mitochondrion	24.26	25.0
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	22.77	24.86
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	22.77	24.86
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	22.77	24.73
PGSC0003DMT400016099	Potato	cytosol	22.52	24.73
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	24.26	24.5
PGSC0003DMT400059327	Potato	cytosol	22.28	24.39
PGSC0003DMT400090382	Potato	cytosol	23.02	24.22
PGSC0003DMT400067303	Potato	extracellular	21.53	23.77
PGSC0003DMT400090333	Potato	cytosol	18.07	23.55
PGSC0003DMT400059330	Potato	extracellular	22.03	23.55
PGSC0003DMT400076282	Potato	nucleus	9.16	23.42
PGSC0003DMT400094202	Potato	cytosol	16.58	23.34
PGSC0003DMT400030295	Potato	cytosol	11.39	23.23
PGSC0003DMT400016096	Potato	cytosol	11.63	22.71
PGSC0003DMT400097507	Potato	cytosol	13.37	22.69
PGSC0003DMT400045556	Potato	cytosol	24.01	21.0
PGSC0003DMT400080292	Potato	cytosol	10.15	20.71
PGSC0003DMT400059329	Potato	vacuole	20.3	20.45
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	8.91	20.0
PGSC0003DMT400088797	Potato	cytosol	12.13	19.92
PGSC0003DMT400015653	Potato	cytosol, plastid	24.26	19.92
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	13.37	19.57
PGSC0003DMT400053922	Potato	extracellular, golgi	19.8	19.14
PGSC0003DMT400093810	Potato	plastid	12.87	18.57
PGSC0003DMT400059334	Potato	plastid	16.09	18.06
PGSC0003DMT400053926	Potato	cytosol	10.64	16.35
PGSC0003DMT400080293	Potato	nucleus	9.16	14.57

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102601387	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1BIZ8	PFAM:PF00646
EnsemblPlantsGene:PGSC0003DMG400017998	PGSC:PGSC0003DMG400017998	EnsemblPlants:PGSC0003DMT400046369	PFscan:PS50181	PANTHER:PTHR31790	PANTHER:PTHR31790:SF34
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002962797	RefSeq:XP_006367729.1	RefSeq:XP_015161104.1
SEG:seg	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017998]

Coordinates

chr00:+:25509563..25514000

Molecular Weight (calculated)

45359.4 Da

IEP (calculated)

8.661

GRAVY (calculated)

-0.138

Length

404 amino acids

Sequence
(BLAST)

001: MSDIPPEVIS EILSRLPVKS LLRFRCVSKS IKTLIDSPKF IEAHLKNQEL KPNSDLKLIL KAHIVADNLF SLDFTSMAST QMPRELAHPL KHLYGPTQVL
101: GSCRGLVLIS NNMNDNGVWN PSTKVFRKLP FCQFNPPRKP PGGRGPGLAQ IRGGFGYDCL ADDYKVVTIA QLYHPDAEPS LVSETMVFSL KLGVWKKVQD
201: CPYWLLKEDN GACAGGALHW IVTKEPAAWW SPLILVGLKL GNGSFQEVAY PENLGNSLQM NLAVLGECLC LLKGHLTCTN AKNHVLDRID VWMMKVYGVK
301: ESWVKLFSVE QLEGRQHFRY LRPITYSVTG KEVLLEMDNR KFLWYSLERK SLKHAKISGG LDTFESIVCL GSLVPLYGGG NEKDRMKGIE QRDDSVTVEI
401: KMEL

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.