Factsheet for PGSC0003DMT400096882

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007400.1.1	Tomato	cytosol	67.75	49.21
PGSC0003DMT400090382	Potato	cytosol	66.3	47.66
PGSC0003DMT400080292	Potato	cytosol	34.06	47.47
PGSC0003DMT400093810	Potato	plastid	42.39	41.79
PGSC0003DMT400088797	Potato	cytosol	34.42	38.62
PGSC0003DMT400053926	Potato	cytosol	35.87	37.64
PGSC0003DMT400059327	Potato	cytosol	43.84	32.79
PGSC0003DMT400059329	Potato	vacuole	46.74	32.17
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	19.2	29.44
PGSC0003DMT400067303	Potato	extracellular	38.04	28.69
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	38.04	28.23
PGSC0003DMT400059330	Potato	extracellular	38.04	27.78
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	31.16	26.22
PGSC0003DMT400094202	Potato	cytosol	27.17	26.13
PGSC0003DMT400053922	Potato	extracellular, golgi	38.41	25.36
PGSC0003DMT400092235	Potato	cytosol	30.07	25.08
PGSC0003DMT400090333	Potato	cytosol	27.9	24.84
PGSC0003DMT400097507	Potato	cytosol	21.01	24.37
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	33.33	24.34
PGSC0003DMT400080239	Potato	cytosol, plastid	27.17	23.51
PGSC0003DMT400035091	Potato	mitochondrion	32.97	23.21
PGSC0003DMT400080382	Potato	golgi	31.52	23.14
PGSC0003DMT400009709	Potato	cytosol	31.16	22.75
PGSC0003DMT400096925	Potato	cytosol	20.65	22.62
PGSC0003DMT400080293	Potato	nucleus	20.65	22.44
PGSC0003DMT400009785	Potato	cytosol	30.43	22.16
PGSC0003DMT400096151	Potato	cytosol	31.52	21.86
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	27.9	21.81
PGSC0003DMT400016504	Potato	cytosol	30.43	21.76
PGSC0003DMT400055337	Potato	plastid	31.88	21.67
PGSC0003DMT400085500	Potato	cytosol	30.07	21.67
PGSC0003DMT400059334	Potato	plastid	28.26	21.67
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	31.16	21.5
PGSC0003DMT400076284	Potato	cytosol	32.97	21.46
PGSC0003DMT400006240	Potato	mitochondrion	25.36	21.34
PGSC0003DMT400095263	Potato	cytosol	21.01	21.32
PGSC0003DMT400080369	Potato	nucleus	30.8	21.3
PGSC0003DMT400076275	Potato	nucleus	30.8	21.14
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	25.0	20.6
PGSC0003DMT400031977	Potato	cytosol	28.99	20.15
VIT_18s0041g01100.t01	Wine grape	cytosol	17.39	19.75
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	26.45	19.73
PGSC0003DMT400076282	Potato	nucleus	11.23	19.62
PGSC0003DMT400076274	Potato	cytosol	26.45	18.86
PGSC0003DMT400016096	Potato	cytosol	14.13	18.84
PGSC0003DMT400076216	Potato	cytosol	26.45	18.77
Bra014991.1-P	Field mustard	cytosol	24.28	18.11
AT3G23880.1	Thale cress	cytosol	23.55	17.86
KRH72048	Soybean	cytosol	22.83	17.85
KRH11340	Soybean	cytosol, peroxisome, plastid	24.64	17.75
KRH11341	Soybean	cytosol, plastid	25.0	17.56
PGSC0003DMT400012000	Potato	plastid	23.19	17.3
KRH35044	Soybean	cytosol, extracellular, golgi	22.46	17.27
PGSC0003DMT400015653	Potato	cytosol, plastid	30.43	17.07
PGSC0003DMT400045556	Potato	cytosol	27.9	16.67
KRH20939	Soybean	cytosol, mitochondrion	24.28	16.5
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	22.1	16.49
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	22.1	16.49
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.23	16.4
PGSC0003DMT400016057	Potato	cytosol	22.1	16.35
PGSC0003DMT400058829	Potato	cytosol	21.38	16.21
PGSC0003DMT400016099	Potato	cytosol	21.38	16.03
PGSC0003DMT400034123	Potato	golgi	21.01	15.8
PGSC0003DMT400025788	Potato	cytosol	22.1	15.56
KRH35047	Soybean	cytosol, peroxisome, plastid	20.65	14.5
PGSC0003DMT400046369	Potato	cytosol	19.57	13.37
VIT_18s0041g01090.t01	Wine grape	cytosol	19.2	13.35
PGSC0003DMT400030295	Potato	cytosol	9.06	12.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400096882	EnsemblPlantsGene:PGSC0003DMG400046453	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF07734	PGSC:PGSC0003DMG400046453	TIGRFAMs:TIGR01640	UniParc:UPI000294CCCF	UniProt:M1DZF8	MapMan:35.1

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046453]

Coordinates

chr5:-:5422281..5423494

Molecular Weight (calculated)

30934.7 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.192

Length

276 amino acids

Sequence
(BLAST)

001: MQRQVPRISI QYAVDPAEHS RVSGEPPCFP EDSDILFLLV CVVRMLRGLA QHPSQYVRGF IDSQSINLGS VNGLICVFNG QRNAYICNPT ITKSKELPKF
101: TSNLCTDAIK CGFGYDESSD DYKVVFINYP YNHYSSSIMT TVVKIYSLRI NSWTTLHDQL QGIFLLNHYG RFVNGKLYWT SSTGNDNYKV CNITSFDLAD
201: GTWGSLELPS CGKDNSDINV GVVGSDLSMV YTCHRGAATS DVWIMKHSGA NVSWTKLFTI KYPQNIKTHR CFAPSN

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.