Factsheet for PGSC0003DMT400093810

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088797	Potato	cytosol	61.43	69.92
PGSC0003DMT400080292	Potato	cytosol	43.57	61.62
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	85.36	61.44
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	35.71	55.56
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	79.29	54.95
PGSC0003DMT400053926	Potato	cytosol	48.21	51.33
PGSC0003DMT400059329	Potato	vacuole	65.0	45.39
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	41.79	42.39
PGSC0003DMT400090382	Potato	cytosol	55.36	40.36
PGSC0003DMT400067303	Potato	extracellular	47.86	36.61
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	48.57	36.56
PGSC0003DMT400059327	Potato	cytosol	47.14	35.77
PGSC0003DMT400053922	Potato	extracellular, golgi	52.5	35.17
PGSC0003DMT400059330	Potato	extracellular	42.5	31.48
PGSC0003DMT400059334	Potato	plastid	40.0	31.11
PGSC0003DMT400097507	Potato	cytosol	25.36	29.83
PGSC0003DMT400076282	Potato	nucleus	16.79	29.75
PGSC0003DMT400094202	Potato	cytosol	30.0	29.27
PGSC0003DMT400080293	Potato	nucleus	26.43	29.13
PGSC0003DMT400090333	Potato	cytosol	31.43	28.39
PGSC0003DMT400092235	Potato	cytosol	31.79	26.89
PGSC0003DMT400076275	Potato	nucleus	36.79	25.62
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	32.14	25.5
PGSC0003DMT400080239	Potato	cytosol, plastid	28.57	25.08
PGSC0003DMT400009785	Potato	cytosol	33.93	25.07
PGSC0003DMT400009709	Potato	cytosol	33.57	24.87
PGSC0003DMT400016504	Potato	cytosol	33.93	24.61
PGSC0003DMT400055337	Potato	plastid	35.0	24.14
PGSC0003DMT400080382	Potato	golgi	32.14	23.94
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	31.79	23.55
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	27.5	23.48
PGSC0003DMT400096151	Potato	cytosol	33.21	23.37
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	32.86	23.0
VIT_18s0041g01100.t01	Wine grape	cytosol	19.64	22.63
PGSC0003DMT400035091	Potato	mitochondrion	31.43	22.45
PGSC0003DMT400076284	Potato	cytosol	33.57	22.17
PGSC0003DMT400080369	Potato	nucleus	31.43	22.06
PGSC0003DMT400006240	Potato	mitochondrion	25.71	21.95
PGSC0003DMT400085500	Potato	cytosol	30.0	21.93
PGSC0003DMT400031977	Potato	cytosol	30.36	21.41
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	27.86	21.08
PGSC0003DMT400096925	Potato	cytosol	18.57	20.63
PGSC0003DMT400095263	Potato	cytosol	20.0	20.59
PGSC0003DMT400030295	Potato	cytosol	14.29	20.2
KRH11340	Soybean	cytosol, peroxisome, plastid	27.14	19.84
PGSC0003DMT400045556	Potato	cytosol	32.14	19.48
PGSC0003DMT400076216	Potato	cytosol	26.43	19.02
KRH20939	Soybean	cytosol, mitochondrion	27.5	18.97
AT3G23880.1	Thale cress	cytosol	24.64	18.96
Bra014991.1-P	Field mustard	cytosol	25.0	18.92
PGSC0003DMT400016096	Potato	cytosol	13.93	18.84
KRH35044	Soybean	cytosol, extracellular, golgi	23.93	18.66
PGSC0003DMT400076274	Potato	cytosol	25.71	18.6
PGSC0003DMT400034123	Potato	golgi	24.29	18.53
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	21.43	17.91
KRH11341	Soybean	cytosol, plastid	25.0	17.81
PGSC0003DMT400025788	Potato	cytosol	24.64	17.6
PGSC0003DMT400015653	Potato	cytosol, plastid	30.36	17.28
KRH72048	Soybean	cytosol	21.43	17.0
KRH35047	Soybean	cytosol, peroxisome, plastid	23.21	16.54
PGSC0003DMT400012000	Potato	plastid	21.79	16.49
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	20.36	15.41
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	20.36	15.41
PGSC0003DMT400058829	Potato	cytosol	19.29	14.84
PGSC0003DMT400016057	Potato	cytosol	19.29	14.48
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	9.64	14.29
VIT_18s0041g01090.t01	Wine grape	cytosol	18.93	13.35
PGSC0003DMT400046369	Potato	cytosol	18.57	12.87
PGSC0003DMT400016099	Potato	cytosol	16.79	12.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400093810	EnsemblPlantsGene:PGSC0003DMG400043381	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF07734	PGSC:PGSC0003DMG400043381	SEG:seg	TIGRFAMs:TIGR01640	UniParc:UPI0002958B88	UniProt:M1DSR5
MapMan:35.1	:	:	:	:	:

Description

F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400043381]

Coordinates

chr5:-:5441884..5442726

Molecular Weight (calculated)

32011.3 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.163

Length

280 amino acids

Sequence
(BLAST)

001: MDPPCSPPFF VGSVNGLICL FSRRRDTYIW NPTIKKSKKL LKSSWGTSRY TKYGFGYDDS RNDYKALFID YCGYSCNGEL SNLRVVVKIY SSRTDSWTTF
101: HDQLQGIFLL NYSGKFINGK IYWAASTGIH DYNVRNIISF DVADETWGSL ELPICGEEVF NIKLGVVESE LSMLYTCKPG TTSDVWILKD RRVNVSWMKR
201: FTIEYPQYVV LYRFDSPIFT FSIHQSDKGE ILLLIPGKIM IFDGSTKKFK HSAIVKECNT AEIYGESIVN PLTISCKSSA

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.