Factsheet for PGSC0003DMT400016504

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
peroxisome 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076275	Potato	nucleus	48.96	47.01
PGSC0003DMT400006240	Potato	mitochondrion	38.34	45.12
PGSC0003DMT400080382	Potato	golgi	43.78	44.95
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	43.78	44.71
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	45.6	44.0
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	37.31	43.9
PGSC0003DMT400009785	Potato	cytosol	43.01	43.8
PGSC0003DMT400035091	Potato	mitochondrion	44.04	43.37
PGSC0003DMT400055337	Potato	plastid	45.6	43.35
PGSC0003DMT400080369	Potato	nucleus	43.78	42.36
PGSC0003DMT400009709	Potato	cytosol	41.45	42.33
PGSC0003DMT400095263	Potato	cytosol	29.27	41.54
PGSC0003DMT400031977	Potato	cytosol	42.49	41.31
PGSC0003DMT400076282	Potato	nucleus	16.58	40.51
PGSC0003DMT400094202	Potato	cytosol	30.05	40.42
PGSC0003DMT400097507	Potato	cytosol	24.61	39.92
PGSC0003DMT400080239	Potato	cytosol, plastid	32.9	39.81
PGSC0003DMT400090333	Potato	cytosol	31.61	39.35
PGSC0003DMT400096151	Potato	cytosol	40.16	38.94
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	35.23	38.53
PGSC0003DMT400085500	Potato	cytosol	38.08	38.38
PGSC0003DMT400092235	Potato	cytosol	32.38	37.76
PGSC0003DMT400076284	Potato	cytosol	41.19	37.5
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	36.01	37.37
PGSC0003DMT400059327	Potato	cytosol	35.49	37.13
PGSC0003DMT400045556	Potato	cytosol	43.26	36.15
PGSC0003DMT400080292	Potato	cytosol	18.39	35.86
PGSC0003DMT400067303	Potato	extracellular	33.68	35.52
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.68	35.14
KRH11340	Soybean	cytosol, peroxisome, plastid	33.68	33.94
PGSC0003DMT400093810	Potato	plastid	24.61	33.93
PGSC0003DMT400096925	Potato	cytosol	22.02	33.73
PGSC0003DMT400090382	Potato	cytosol	33.42	33.59
PGSC0003DMT400015653	Potato	cytosol, plastid	42.75	33.54
PGSC0003DMT400059330	Potato	extracellular	32.38	33.07
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	28.24	32.54
PGSC0003DMT400088797	Potato	cytosol	20.47	32.11
PGSC0003DMT400076274	Potato	cytosol	32.12	32.04
PGSC0003DMT400034123	Potato	golgi	30.31	31.88
KRH20939	Soybean	cytosol, mitochondrion	33.42	31.77
PGSC0003DMT400059329	Potato	vacuole	32.9	31.67
PGSC0003DMT400076216	Potato	cytosol	31.35	31.11
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	21.76	30.43
PGSC0003DMT400053926	Potato	cytosol	20.73	30.42
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	29.02	30.27
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	29.02	30.27
PGSC0003DMT400025788	Potato	cytosol	30.31	29.85
KRH35044	Soybean	cytosol, extracellular, golgi	27.46	29.53
KRH11341	Soybean	cytosol, plastid	29.53	29.01
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	13.47	28.89
PGSC0003DMT400053922	Potato	extracellular, golgi	30.31	27.99
VIT_18s0041g01100.t01	Wine grape	cytosol	17.62	27.98
KRH35047	Soybean	cytosol, peroxisome, plastid	27.98	27.48
PGSC0003DMT400058829	Potato	cytosol	25.39	26.92
VIT_18s0041g01090.t01	Wine grape	cytosol	26.94	26.2
KRH72048	Soybean	cytosol	23.83	26.06
PGSC0003DMT400012000	Potato	plastid	24.87	25.95
PGSC0003DMT400059334	Potato	plastid	23.58	25.28
AT3G23880.1	Thale cress	cytosol	23.83	25.27
PGSC0003DMT400046369	Potato	cytosol	26.42	25.25
Bra014991.1-P	Field mustard	cytosol	23.83	24.86
PGSC0003DMT400016057	Potato	cytosol	23.83	24.66
PGSC0003DMT400016096	Potato	cytosol	13.21	24.64
PGSC0003DMT400016099	Potato	cytosol	23.32	24.46
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.66	23.81
PGSC0003DMT400030295	Potato	cytosol	11.66	22.73
PGSC0003DMT400080293	Potato	nucleus	14.77	22.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400016504	EnsemblPlantsGene:PGSC0003DMG401006445	EntrezGene:102598253	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFscan:PS50181	PGSC:PGSC0003DMG401006445	RefSeq:XP_006363470.1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00029562D9	UniProt:M1A7R6	MapMan:19.2.2.8.1.4.6	:

Description

F-box [Source:PGSC_GENE;Acc:PGSC0003DMG401006445]

Coordinates

chr9:+:54466058..54469210

Molecular Weight (calculated)

44275.3 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.246

Length

386 amino acids

Sequence
(BLAST)

001: MSTLPTDLIV DILSRFSVKT LLKFRCVSKS WCTLIRSPEF VKTHLSVSAK NKDHTHHRLV WTENRDLFTS RDIKQHVLRE CSVSSLHNDS VVESLDLNYP
101: LKNPELRVCI VGSVNGLICL DIEDNDLVLW NPTLRVYRKL PDSRLRVSGG SRLDRITSVM YGFGYDEFSD DYKVVGVRCS CTRYPLEVKI YSLKNNSWRT
201: KGDILEVVQL TKPCKFLNGK LHWVNDMNGG FRNYGNIISI DLADERWGKV EQPDYGKKNF SLKLEMLGSD LSVFCNYKTM SRNFMTTSHA DVWVMKEYGV
301: KESWTKTYSI KYSPNVFSDF SPFISLTLCM SNKGEILLVP RSTLTAHNPE DEPIRYLKVI NFGYCNAANI YIESLVCAPL FGTNKA

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.