Factsheet for PGSC0003DMT400016057

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016099	Potato	cytosol	70.51	71.47
PGSC0003DMT400016096	Potato	cytosol	37.53	67.63
PGSC0003DMT400058829	Potato	cytosol	46.38	47.53
PGSC0003DMT400012000	Potato	plastid	42.63	42.97
PGSC0003DMT400034123	Potato	golgi	26.54	26.98
Bra001187.1-P	Field mustard	cytosol	19.03	26.79
CDY08063	Canola	cytosol	28.42	26.37
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	23.32	25.97
PGSC0003DMT400076274	Potato	cytosol	26.81	25.84
AT3G06240.1	Thale cress	cytosol	29.49	25.76
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	25.47	25.68
PGSC0003DMT400080382	Potato	golgi	25.74	25.53
CDY58343	Canola	cytosol	27.61	25.5
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	21.98	25.0
PGSC0003DMT400009709	Potato	cytosol	25.2	24.87
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	24.66	24.86
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	24.66	24.86
PGSC0003DMT400096151	Potato	cytosol	26.27	24.62
PGSC0003DMT400080369	Potato	nucleus	26.27	24.56
PGSC0003DMT400080239	Potato	cytosol, plastid	20.91	24.45
PGSC0003DMT400085500	Potato	cytosol	24.93	24.28
PGSC0003DMT400009785	Potato	cytosol	24.66	24.27
PGSC0003DMT400095263	Potato	cytosol	17.69	24.26
PGSC0003DMT400031977	Potato	cytosol	25.74	24.18
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	22.79	24.08
PGSC0003DMT400090333	Potato	cytosol	19.84	23.87
PGSC0003DMT400092235	Potato	cytosol	21.18	23.87
PGSC0003DMT400016504	Potato	cytosol	24.66	23.83
PGSC0003DMT400006240	Potato	mitochondrion	20.91	23.78
PGSC0003DMT400090382	Potato	cytosol	24.4	23.7
PGSC0003DMT400076216	Potato	cytosol	24.66	23.65
PGSC0003DMT400046369	Potato	cytosol	25.47	23.51
PGSC0003DMT400096925	Potato	cytosol	15.82	23.41
PGSC0003DMT400076284	Potato	cytosol	26.54	23.35
PGSC0003DMT400094202	Potato	cytosol	17.96	23.34
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	23.59	23.28
PGSC0003DMT400097507	Potato	cytosol	14.75	23.11
PGSC0003DMT400059327	Potato	cytosol	22.79	23.04
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	24.4	22.75
PGSC0003DMT400080292	Potato	cytosol	12.06	22.73
PGSC0003DMT400030295	Potato	cytosol	12.06	22.73
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.26	22.22
PGSC0003DMT400035091	Potato	mitochondrion	23.32	22.19
PGSC0003DMT400076282	Potato	nucleus	9.38	22.15
PGSC0003DMT400076275	Potato	nucleus	23.86	22.14
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	16.35	22.1
PGSC0003DMT400025788	Potato	cytosol	23.06	21.94
PGSC0003DMT400055337	Potato	plastid	23.59	21.67
PGSC0003DMT400067303	Potato	extracellular	21.18	21.58
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	21.45	21.51
PGSC0003DMT400088797	Potato	cytosol	13.4	20.33
PGSC0003DMT400059330	Potato	extracellular	20.38	20.11
PGSC0003DMT400059329	Potato	vacuole	20.91	19.45
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	9.38	19.44
PGSC0003DMT400093810	Potato	plastid	14.48	19.29
PGSC0003DMT400045556	Potato	cytosol	23.59	19.05
PGSC0003DMT400053926	Potato	cytosol	13.4	19.01
PGSC0003DMT400015653	Potato	cytosol, plastid	24.93	18.9
PGSC0003DMT400053922	Potato	extracellular, golgi	19.84	17.7
PGSC0003DMT400059334	Potato	plastid	16.62	17.22
PGSC0003DMT400080293	Potato	nucleus	8.58	12.6

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102584314	MapMan:19.2.2.8.1.4.6	ncoils:Coil	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	UniProt:M1A704	PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400006277	PGSC:PGSC0003DMG400006277
EnsemblPlants:PGSC0003DMT400016057	PANTHER:PTHR44355	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000294FEA4	RefSeq:XP_006356978.1	SEG:seg	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006277]

Coordinates

chr1:+:60245380..60247024

Molecular Weight (calculated)

42838.0 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.093

Length

373 amino acids

Sequence
(BLAST)

001: MAMSKGKYLP EELISEIFYR LPVKSIGRCR CLSKHWRNFL SHPQFIKLHF NLHAHTQEEK LIIVTWRSEL HTITLIHDIL EDESIDSIST KVNFQQLTQN
101: WISVAGSCNG LVLVIDRDNV QFLINPTTLE YHKFPFFDWA LPPKTSCYMY GLGYDIVSDD YKVVSLSYRD TNNEFMSNTY VDLYSVRKGH WETLGVSPYD
201: HSLTDRASGV LVNGALHWLA CRTVEYSTAI AAFDLSVDKF LEVPGPIDLQ DNCFMCNLAT LKGCLCISTS LPRDINTVTI WIMKEYGVKE SWTKFEIIEP
301: SLDDSLSTLL CSITDEDDVL LEVEEEWVVY NLKENRRKDL LIDVNPVTYE ARTFVDSLVS PYFGNETEGS CIV

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.