Factsheet for PGSC0003DMT400055826

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008450.1.1	Tomato	extracellular, vacuole	85.37	81.95
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	62.69	56.76
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	62.39	56.49
PGSC0003DMT400076216	Potato	cytosol	53.13	45.76
PGSC0003DMT400034123	Potato	golgi	34.93	31.88
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	31.04	31.71
PGSC0003DMT400095263	Potato	cytosol	24.78	30.51
PGSC0003DMT400080239	Potato	cytosol, plastid	28.96	30.41
KRH11340	Soybean	cytosol, peroxisome, plastid	34.63	30.29
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	33.13	29.37
KRH20939	Soybean	cytosol, mitochondrion	35.52	29.31
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	32.24	29.19
PGSC0003DMT400080382	Potato	golgi	32.54	28.99
PGSC0003DMT400009785	Potato	cytosol	32.24	28.5
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	31.64	28.49
PGSC0003DMT400092235	Potato	cytosol	28.06	28.4
PGSC0003DMT400080292	Potato	cytosol	16.72	28.28
PGSC0003DMT400016504	Potato	cytosol	32.54	28.24
PGSC0003DMT400035091	Potato	mitochondrion	32.84	28.06
PGSC0003DMT400006240	Potato	mitochondrion	27.46	28.05
PGSC0003DMT400067303	Potato	extracellular	30.45	27.87
PGSC0003DMT400076275	Potato	nucleus	33.43	27.86
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	29.25	27.76
KRH35044	Soybean	cytosol, extracellular, golgi	29.55	27.58
PGSC0003DMT400009709	Potato	cytosol	31.04	27.51
PGSC0003DMT400076274	Potato	cytosol	31.64	27.39
PGSC0003DMT400055337	Potato	plastid	33.13	27.34
PGSC0003DMT400080369	Potato	nucleus	32.54	27.32
PGSC0003DMT400059330	Potato	extracellular	30.45	26.98
PGSC0003DMT400059327	Potato	cytosol	29.55	26.83
PGSC0003DMT400031977	Potato	cytosol	31.64	26.7
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	31.64	26.5
PGSC0003DMT400012000	Potato	plastid	28.96	26.22
PGSC0003DMT400096925	Potato	cytosol	19.7	26.19
KRH72048	Soybean	cytosol	27.46	26.06
VIT_18s0041g01100.t01	Wine grape	cytosol	18.81	25.93
KRH11341	Soybean	cytosol, plastid	30.15	25.7
PGSC0003DMT400090382	Potato	cytosol	29.25	25.52
PGSC0003DMT400076284	Potato	cytosol	32.24	25.47
PGSC0003DMT400094202	Potato	cytosol	21.79	25.44
PGSC0003DMT400085500	Potato	cytosol	28.96	25.33
KRH35047	Soybean	cytosol, peroxisome, plastid	29.55	25.19
PGSC0003DMT400096151	Potato	cytosol	29.85	25.13
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	20.6	25.0
PGSC0003DMT400025788	Potato	cytosol	28.66	24.49
PGSC0003DMT400058829	Potato	cytosol	26.57	24.45
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	13.73	24.34
Bra014991.1-P	Field mustard	cytosol	26.87	24.32
VIT_18s0041g01090.t01	Wine grape	cytosol	28.66	24.18
AT3G23880.1	Thale cress	cytosol	25.97	23.9
PGSC0003DMT400016057	Potato	cytosol	25.97	23.32
PGSC0003DMT400016099	Potato	cytosol	25.37	23.1
PGSC0003DMT400046369	Potato	cytosol	27.76	23.02
PGSC0003DMT400059329	Potato	vacuole	27.46	22.94
PGSC0003DMT400090333	Potato	cytosol	21.19	22.9
PGSC0003DMT400030295	Potato	cytosol	13.43	22.73
PGSC0003DMT400016096	Potato	cytosol	14.03	22.71
PGSC0003DMT400097507	Potato	cytosol	16.12	22.69
PGSC0003DMT400045556	Potato	cytosol	31.04	22.51
PGSC0003DMT400053926	Potato	cytosol	17.61	22.43
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	11.94	22.22
PGSC0003DMT400088797	Potato	cytosol	15.82	21.54
PGSC0003DMT400076282	Potato	nucleus	10.15	21.52
PGSC0003DMT400093810	Potato	plastid	17.91	21.43
PGSC0003DMT400015653	Potato	cytosol, plastid	31.04	21.14
PGSC0003DMT400053922	Potato	extracellular, golgi	26.27	21.05
PGSC0003DMT400059334	Potato	plastid	22.09	20.56
PGSC0003DMT400080293	Potato	nucleus	13.13	17.32

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102599259	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1BYL8
PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG403021681	PGSC:PGSC0003DMG403021681	EnsemblPlants:PGSC0003DMT400055826	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00029631A7	RefSeq:XP_006366022.1
SEG:seg	:	:	:	:	:

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG403021681]

Coordinates

chr10:+:3962888..3965730

Molecular Weight (calculated)

37288.0 Da

IEP (calculated)

8.229

GRAVY (calculated)

0.082

Length

335 amino acids

Sequence
(BLAST)

001: MEQTSQGSTI FPPEIIFEIF LRLPVKSLLK FKCVSKSWFF LLSNPLFSKT HVDFCLKNPK LTDYRLAVVA SVYGLGRKCN FYNMGFENSC LSVARNSCPA
101: KSLAISARIL GSCNGLICLT SDSFTVMLLN PCTGKFNLFP DSMLRSNGGG GGGSGVGCFI RYGFGYDASF EDYKVVKIFS FPHIEGRYEN MVNVYSLKAK
201: SWKMIEGFNS GSLNGKVGVF VNGALHWEAS HSHCSGSFWE IVTLDLAVER YGKIALPSYE DGGVYWTLGV SRGYLVGCCN YEKNKADVWV MKEYGVEESW
301: TKLVTISLPV DRRAYILPLF VAENCDEFLL QLGKS

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.