Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014991.1-P | Field mustard | cytosol | 82.97 | 81.62 |
| CDX77477 | Canola | cytosol | 82.14 | 80.81 |
| CDX85142 | Canola | cytosol | 83.52 | 37.03 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 29.95 | 28.46 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 25.0 | 27.74 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.41 | 27.57 |
| PGSC0003DMT400096925 | Potato | cytosol | 18.96 | 27.38 |
| KRH20939 | Soybean | cytosol, mitochondrion | 30.49 | 27.34 |
| Solyc02g033040.2.1 | Tomato | nucleus | 25.27 | 27.06 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 28.3 | 27.03 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 27.47 | 27.03 |
| PGSC0003DMT400095263 | Potato | cytosol | 19.78 | 26.47 |
| PGSC0003DMT400009785 | Potato | cytosol | 27.47 | 26.39 |
| Solyc01g067030.2.1 | Tomato | extracellular | 26.65 | 26.29 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 23.9 | 25.97 |
| PGSC0003DMT400034123 | Potato | golgi | 26.1 | 25.89 |
| PGSC0003DMT400076275 | Potato | nucleus | 28.57 | 25.87 |
| PGSC0003DMT400009709 | Potato | cytosol | 26.65 | 25.66 |
| PGSC0003DMT400096151 | Potato | cytosol | 28.02 | 25.63 |
| PGSC0003DMT400080369 | Potato | nucleus | 28.02 | 25.56 |
| PGSC0003DMT400080382 | Potato | golgi | 26.37 | 25.53 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 28.02 | 25.5 |
| KRH11341 | Soybean | cytosol, plastid | 27.47 | 25.45 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 22.25 | 25.39 |
| PGSC0003DMT400055337 | Potato | plastid | 28.3 | 25.37 |
| PGSC0003DMT400080292 | Potato | cytosol | 13.74 | 25.25 |
| PGSC0003DMT400059327 | Potato | cytosol | 25.55 | 25.2 |
| PGSC0003DMT400085500 | Potato | cytosol | 26.37 | 25.07 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 24.45 | 24.79 |
| PGSC0003DMT400093810 | Potato | plastid | 18.96 | 24.64 |
| Solyc09g091710.1.1 | Tomato | nucleus | 27.2 | 24.63 |
| PGSC0003DMT400090333 | Potato | cytosol | 20.88 | 24.52 |
| Solyc10g075010.1.1 | Tomato | extracellular | 23.9 | 24.51 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.65 | 24.43 |
| Solyc09g091220.1.1 | Tomato | cytosol | 26.65 | 24.37 |
| PGSC0003DMT400076284 | Potato | cytosol | 28.3 | 24.29 |
| Solyc09g091690.1.1 | Tomato | cytosol | 25.82 | 24.23 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 21.7 | 24.09 |
| PGSC0003DMT400094202 | Potato | cytosol | 18.96 | 24.04 |
| Solyc05g007400.1.1 | Tomato | cytosol | 25.0 | 23.95 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 24.45 | 23.92 |
| PGSC0003DMT400076216 | Potato | cytosol | 25.55 | 23.91 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 25.27 | 23.83 |
| PGSC0003DMT400016504 | Potato | cytosol | 25.27 | 23.83 |
| PGSC0003DMT400067303 | Potato | extracellular | 23.9 | 23.77 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 25.55 | 23.72 |
| Solyc05g007530.1.1 | Tomato | cytosol | 24.18 | 23.66 |
| PGSC0003DMT400092235 | Potato | cytosol | 21.43 | 23.57 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 17.86 | 23.55 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 24.45 | 23.55 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 22.8 | 23.51 |
| PGSC0003DMT400090382 | Potato | cytosol | 24.73 | 23.44 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 25.27 | 23.41 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 23.63 | 23.24 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 22.25 | 23.21 |
| PGSC0003DMT400097507 | Potato | cytosol | 15.11 | 23.11 |
| Solyc10g052710.1.1 | Tomato | cytosol | 24.18 | 23.04 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 23.35 | 22.97 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 23.35 | 22.91 |
| Solyc10g068340.1.1 | Tomato | cytosol | 16.21 | 22.69 |
| PGSC0003DMT400053926 | Potato | cytosol | 16.21 | 22.43 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 23.9 | 22.36 |
| PGSC0003DMT400059329 | Potato | vacuole | 24.45 | 22.19 |
| PGSC0003DMT400025788 | Potato | cytosol | 23.9 | 22.19 |
| PGSC0003DMT400059330 | Potato | extracellular | 22.8 | 21.96 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 24.18 | 21.78 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 24.18 | 21.73 |
| PGSC0003DMT400076274 | Potato | cytosol | 23.08 | 21.71 |
| Solyc05g007360.1.1 | Tomato | extracellular | 23.9 | 21.7 |
| AT3G06240.1 | Thale cress | cytosol | 25.27 | 21.55 |
| KRH72048 | Soybean | cytosol | 20.88 | 21.53 |
| PGSC0003DMT400076282 | Potato | nucleus | 9.34 | 21.52 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 25.82 | 21.51 |
| PGSC0003DMT400031977 | Potato | cytosol | 22.53 | 20.65 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 27.47 | 20.33 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 23.08 | 20.1 |
| PGSC0003DMT400088797 | Potato | cytosol | 13.46 | 19.92 |
| PGSC0003DMT400045556 | Potato | cytosol | 25.27 | 19.91 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 23.63 | 19.86 |
| PGSC0003DMT400059334 | Potato | plastid | 19.23 | 19.44 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 9.34 | 18.89 |
| AT4G12560.2 | Thale cress | cytosol | 21.15 | 18.64 |
| AT4G22390.1 | Thale cress | cytosol | 20.33 | 18.41 |
| PGSC0003DMT400030295 | Potato | cytosol | 9.89 | 18.18 |
| PGSC0003DMT400080293 | Potato | nucleus | 9.89 | 14.17 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:821971 | ProteinID:AEE76825.1 | EMBL:AK117299 | ArrayExpress:AT3G23880 |
| EnsemblPlantsGene:AT3G23880 | RefSeq:AT3G23880 | TAIR:AT3G23880 | RefSeq:AT3G23880-TAIR-G | EnsemblPlants:AT3G23880.1 | TAIR:AT3G23880.1 |
| Unigene:At.37629 | ProteinID:BAB03005.1 | EMBL:BT008354 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031146 | InterPro:IPR001810 | RefSeq:NP_189030.1 | PFAM:PF00646 | PFAM:PF08268 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | UniProt:Q9LIR8 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000AC651 | SEG:seg | : |
Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
Coordinates
chr3:-:8621986..8623214
Molecular Weight (calculated)
41124.2 Da
IEP (calculated)
6.941
GRAVY (calculated)
-0.135
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.