Factsheet for Solyc09g091710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076275	Potato	nucleus	93.53	93.53
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	49.75	52.49
Solyc02g033040.2.1	Tomato	nucleus	44.28	52.35
Solyc10g052710.1.1	Tomato	cytosol	42.54	44.76
Solyc05g007530.1.1	Tomato	cytosol	40.8	44.09
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	44.28	43.95
Solyc10g068340.1.1	Tomato	cytosol	28.11	43.46
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	41.54	43.26
Solyc10g075010.1.1	Tomato	extracellular	37.31	42.25
Solyc05g007400.1.1	Tomato	cytosol	36.57	38.68
KRH11340	Soybean	cytosol, peroxisome, plastid	36.82	38.64
Solyc09g072910.1.1	Tomato	plasma membrane	41.29	37.99
Solyc01g067030.2.1	Tomato	extracellular	34.58	37.67
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	39.8	36.95
KRH20939	Soybean	cytosol, mitochondrion	37.31	36.95
KRH11341	Soybean	cytosol, plastid	35.32	36.13
Solyc09g091220.1.1	Tomato	cytosol	34.08	34.42
Solyc05g007360.1.1	Tomato	extracellular	33.83	33.92
Solyc09g091690.1.1	Tomato	cytosol	32.34	33.51
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	32.09	33.16
KRH35044	Soybean	cytosol, extracellular, golgi	29.35	32.87
Solyc10g008450.1.1	Tomato	extracellular, vacuole	28.36	32.66
VIT_18s0041g01100.t01	Wine grape	cytosol	19.65	32.51
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	29.35	31.81
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	31.59	31.44
VIT_18s0041g01090.t01	Wine grape	cytosol	30.35	30.73
KRH72048	Soybean	cytosol	25.37	28.9
Solyc12g099550.1.1	Tomato	cytosol	24.13	28.78
Solyc01g008660.2.1	Tomato	cytosol	24.63	28.78
KRH35047	Soybean	cytosol, peroxisome, plastid	27.86	28.5
Bra014991.1-P	Field mustard	cytosol	25.37	27.57
AT3G23880.1	Thale cress	cytosol	24.63	27.2

Protein Annotations

EnsemblPlants:Solyc09g091710.1.1	EnsemblPlantsGene:Solyc09g091710.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000276B5B6
UniProt:K4CWJ7	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

No Description!

Coordinates

chr9:-:70946048..70947256

Molecular Weight (calculated)

45823.5 Da

IEP (calculated)

4.898

GRAVY (calculated)

-0.285

Length

402 amino acids

Sequence
(BLAST)

001: MESEEDESSH QNSKRSKPIS DSQFASISMQ DSAFTAPNLP EELIAEILKR VPVKSLLQFR CVSKSWLGII SSSDFVKTHL SLSANDKEYK HRRLMLSFVQ
101: PENNLKDCSL GSLLYGSVTE AFDLDYPMKN PVKSVWIVGS VNGLICVAIE ENDLFIWNPS IRKFKRLPSF RPTLRCGYYF MYGFGYDEVN DDYKVVGVFC
201: IFGVGSSYDV EVKVYGLKSD SWRNIDDYHG GVLLNDSGKF VKGKLHWATS ARFGGYNGWD IVSIDLKDEK WGKIEQPCYE KGNFDFVLGV LEDNLSVLCN
301: YNRTRADVWI MKDYGVKDSW EKMYTISCPN DPGKYMFSPP LCMSKKGEIL LVFGSIFMIY NPSDDSIRYP EVTNFDACLE AEIYTESLIS PILQNEPIPQ
401: QQ

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.