Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- plasma membrane 3
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400093810 | Potato | plastid | 61.44 | 85.36 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 86.12 | 82.92 |
| Solyc05g007360.1.1 | Tomato | extracellular | 59.13 | 57.36 |
| Solyc05g007400.1.1 | Tomato | cytosol | 47.81 | 48.95 |
| Solyc05g007530.1.1 | Tomato | cytosol | 40.87 | 42.74 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 40.62 | 36.49 |
| Solyc02g033040.2.1 | Tomato | nucleus | 28.28 | 32.35 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 31.88 | 32.12 |
| Solyc09g091710.1.1 | Tomato | nucleus | 33.16 | 32.09 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 30.33 | 30.97 |
| Solyc10g075010.1.1 | Tomato | extracellular | 27.76 | 30.42 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 30.85 | 29.63 |
| Solyc10g068340.1.1 | Tomato | cytosol | 19.79 | 29.62 |
| Solyc10g052710.1.1 | Tomato | cytosol | 29.05 | 29.58 |
| Solyc01g067030.2.1 | Tomato | extracellular | 26.74 | 28.18 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 29.82 | 26.54 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 25.71 | 26.11 |
| Solyc09g091690.1.1 | Tomato | cytosol | 25.96 | 26.03 |
| KRH20939 | Soybean | cytosol, mitochondrion | 26.48 | 25.37 |
| KRH11341 | Soybean | cytosol, plastid | 25.19 | 24.94 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 22.88 | 24.79 |
| Solyc09g091220.1.1 | Tomato | cytosol | 25.19 | 24.62 |
| KRH72048 | Soybean | cytosol | 21.85 | 24.08 |
| AT3G23880.1 | Thale cress | cytosol | 22.36 | 23.9 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 20.82 | 23.21 |
| Bra014991.1-P | Field mustard | cytosol | 21.85 | 22.97 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 22.11 | 21.88 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 20.82 | 21.83 |
| Solyc01g008660.2.1 | Tomato | cytosol | 19.28 | 21.8 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 13.37 | 21.4 |
| Solyc12g099550.1.1 | Tomato | cytosol | 18.51 | 21.36 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 20.57 | 20.15 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 | UniProt:K4BWR2 | PFAM:PF00646 | PFAM:PF07734 |
| PFscan:PS50181 | PANTHER:PTHR44355 | SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc05g007370.1 | EnsemblPlants:Solyc05g007370.1.1 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0002765C9C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:1985630..1986799
Molecular Weight (calculated)
44987.5 Da
IEP (calculated)
8.575
GRAVY (calculated)
0.000
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFHAFRNW IHQTVLFKFL LSWYHFIFTT NHDSILPNEI ITNILLRLPT KSLLICMCVS KSWHQLISSP DFVNIHLKLN KQHKVLIPGY FANIRFCSLP
101: PLFNKQLTQE LYHMDPPCSP PFFVGSVNGL ICLFNRRGDT YIWNPIIRKS KKLLKSSWGT SRYTKYGFGY DDKCNDYKAL FIDHCGNSCN DELSNLRVVV
201: NIYSSRTDSW TTLHDQLQGI FVLNRLGKFI NGKIYWATST GIHDFNVRNI IYFDVASDTW GSLELPICGE EVFNIKLGVV DSELSVLYTC KAGTTSDVWI
301: LKNRRVNVSW MKRFTIEYPQ YAILYGFDSP IFTFSIYLNL SDNDDILLLI PGKIMIFDGS TKKFKHATIV KECNTAEIYG ESMVNPLTL
101: PLFNKQLTQE LYHMDPPCSP PFFVGSVNGL ICLFNRRGDT YIWNPIIRKS KKLLKSSWGT SRYTKYGFGY DDKCNDYKAL FIDHCGNSCN DELSNLRVVV
201: NIYSSRTDSW TTLHDQLQGI FVLNRLGKFI NGKIYWATST GIHDFNVRNI IYFDVASDTW GSLELPICGE EVFNIKLGVV DSELSVLYTC KAGTTSDVWI
301: LKNRRVNVSW MKRFTIEYPQ YAILYGFDSP IFTFSIYLNL SDNDDILLLI PGKIMIFDGS TKKFKHATIV KECNTAEIYG ESMVNPLTL
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.