Factsheet for Solyc05g005110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
plasma membrane 1
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	71.85	76.98
PGSC0003DMT400035091	Potato	mitochondrion	73.33	75.77
PGSC0003DMT400006240	Potato	mitochondrion	57.53	71.04
Solyc09g091710.1.1	Tomato	nucleus	43.95	44.28
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	37.78	40.16
Solyc10g052710.1.1	Tomato	cytosol	37.04	39.27
Solyc02g033040.2.1	Tomato	nucleus	32.35	38.53
Solyc10g068340.1.1	Tomato	cytosol	23.7	36.92
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	34.57	36.27
Solyc05g007400.1.1	Tomato	cytosol	32.59	34.74
Solyc05g007530.1.1	Tomato	cytosol	31.85	34.68
Solyc10g075010.1.1	Tomato	extracellular	28.89	32.96
Solyc01g067030.2.1	Tomato	extracellular	29.14	31.98
Solyc09g072910.1.1	Tomato	plasma membrane	34.32	31.81
Solyc10g008450.1.1	Tomato	extracellular, vacuole	27.16	31.52
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	29.63	30.85
KRH20939	Soybean	cytosol, mitochondrion	30.86	30.79
KRH11340	Soybean	cytosol, peroxisome, plastid	28.89	30.55
KRH35044	Soybean	cytosol, extracellular, golgi	26.91	30.36
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	32.35	30.25
Solyc05g007360.1.1	Tomato	extracellular	29.88	30.17
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	29.63	29.7
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	27.16	29.65
Solyc09g091690.1.1	Tomato	cytosol	28.15	29.38
KRH11341	Soybean	cytosol, plastid	28.15	29.01
KRH35047	Soybean	cytosol, peroxisome, plastid	26.67	27.48
KRH72048	Soybean	cytosol	23.7	27.2
Solyc12g099550.1.1	Tomato	cytosol	22.47	27.0
VIT_18s0041g01090.t01	Wine grape	cytosol	25.93	26.45
Solyc09g091220.1.1	Tomato	cytosol	25.93	26.38
VIT_18s0041g01100.t01	Wine grape	cytosol	15.56	25.93
Solyc01g008660.2.1	Tomato	cytosol	21.73	25.58
Bra014991.1-P	Field mustard	cytosol	22.22	24.32
AT3G23880.1	Thale cress	cytosol	21.73	24.18

Protein Annotations

EnsemblPlants:Solyc05g005110.1.1	EnsemblPlantsGene:Solyc05g005110.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002766C32	UniProt:K4BW42	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr5:-:115571..116788

Molecular Weight (calculated)

46805.6 Da

IEP (calculated)

8.597

GRAVY (calculated)

-0.203

Length

405 amino acids

Sequence
(BLAST)

001: MKLSMKFLVA KMISEGRHRR PKQRRLRRRT EISREDSMGC LPEELILAIL VRVPVKYLLQ FKCVSKNWFN LISSPEFVKT HLDFSANDYT RHMSLLQYNA
101: LSTEIKYCYV TCLFHEPVIE ALDLYCPMKN TPQSVQISGS VNGLVCLSDG FGRLVLWNPS IRKFKNVFGF LPTKMGSAWF KSGFGYDEVH DDYKVVGIFS
201: NMVKAYFEAV IYSLKRDSCT TLEDFKPGVT YCGDAKFVHR KLHWITYRRR GWGISCIDLV EEKWGKLELP SCKEEQELKL GVLQGDLSFL SSNDERNHSD
301: VWVMKEYGVK ASWTKLYTIR YPENYKLVTP LFTYSKGKIL LAFKSSLAIY DPKNDSITYP TVTNVELTDS ITHATYNIDV TSYYSIVEAE ICIESLVCPD
401: LPNKY

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.