Factsheet for Solyc10g052710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092235	Potato	cytosol	70.42	81.27
Solyc09g091710.1.1	Tomato	nucleus	44.76	42.54
Solyc02g033040.2.1	Tomato	nucleus	37.43	42.06
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	41.36	41.47
Solyc10g068340.1.1	Tomato	cytosol	27.75	40.77
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	41.1	40.67
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	39.27	37.04
Solyc10g075010.1.1	Tomato	extracellular	33.25	35.77
Solyc09g072910.1.1	Tomato	plasma membrane	40.05	35.01
KRH11340	Soybean	cytosol, peroxisome, plastid	34.82	34.73
Solyc01g067030.2.1	Tomato	extracellular	33.25	34.42
Solyc05g007530.1.1	Tomato	cytosol	32.98	33.87
Solyc10g008450.1.1	Tomato	extracellular, vacuole	30.89	33.81
Solyc05g007400.1.1	Tomato	cytosol	33.51	33.68
Solyc09g091690.1.1	Tomato	cytosol	33.25	32.73
KRH20939	Soybean	cytosol, mitochondrion	34.55	32.51
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	30.89	31.81
KRH11341	Soybean	cytosol, plastid	32.46	31.55
Solyc09g091220.1.1	Tomato	cytosol	31.94	30.65
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	29.58	29.05
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	30.37	28.71
KRH35044	Soybean	cytosol, extracellular, golgi	26.96	28.69
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	32.2	28.41
Solyc05g007360.1.1	Tomato	extracellular	29.06	27.68
VIT_18s0041g01100.t01	Wine grape	cytosol	17.54	27.57
VIT_18s0041g01090.t01	Wine grape	cytosol	28.01	26.95
Solyc12g099550.1.1	Tomato	cytosol	23.3	26.41
Solyc01g008660.2.1	Tomato	cytosol	23.56	26.16
KRH72048	Soybean	cytosol	23.3	25.21
KRH35047	Soybean	cytosol, peroxisome, plastid	25.92	25.19
AT3G23880.1	Thale cress	cytosol	23.04	24.18
Bra014991.1-P	Field mustard	cytosol	22.77	23.51

Protein Annotations

EnsemblPlants:Solyc10g052710.1.1	EnsemblPlantsGene:Solyc10g052710.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000276A872	UniProt:K4D0X0	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr10:-:53260744..53261892

Molecular Weight (calculated)

44324.2 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.220

Length

382 amino acids

Sequence
(BLAST)

001: MESEVERFHR HPKREKLTKC VEFPSIFPEE LITEIISRLP VKSLLKFMSV SKSWLSLISS PEFINTHLTV YNNNDQRHHR LMLGFSMHCY KLRECSFSSL
101: FCNPVIELSD FNYPMKVEYD EGFSPVGSIN GLICLVHGYH SPKHLFLWNP SIRKYKKFSN SRPKFRYDAC MYGFGYDELH DDYKIVGIFC IYGRSLHIDF
201: KIYSLKGDSW RMIPYSHGGM CFSRRSVFVN GKLHWTTHSF DQSVCKGGGI VSFSLAYENW GKVEEPCYGG KESISDLGVF GNDFCGFSHH LAIGVDVWVM
301: KDYGIKESWT KMCTITYPKL ERDIYFPSVF LSNNGDVLVG YGSMFILYNP KDDSFKYPKV INYSEWQIGE IYIESLISPL ST

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.