Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- nucleus 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059329 | Potato | vacuole | 90.27 | 90.27 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 57.36 | 59.13 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 58.1 | 57.67 |
| Solyc05g007400.1.1 | Tomato | cytosol | 47.88 | 50.53 |
| Solyc05g007530.1.1 | Tomato | cytosol | 39.65 | 42.74 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 43.64 | 40.42 |
| Solyc09g091710.1.1 | Tomato | nucleus | 33.92 | 33.83 |
| Solyc02g033040.2.1 | Tomato | nucleus | 28.43 | 33.53 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 31.92 | 33.16 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 30.67 | 32.28 |
| Solyc10g068340.1.1 | Tomato | cytosol | 20.45 | 31.54 |
| Solyc01g067030.2.1 | Tomato | extracellular | 28.93 | 31.44 |
| Solyc10g075010.1.1 | Tomato | extracellular | 27.18 | 30.7 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 30.17 | 29.88 |
| Solyc10g052710.1.1 | Tomato | cytosol | 27.68 | 29.06 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 29.43 | 27.0 |
| Solyc09g091690.1.1 | Tomato | cytosol | 25.69 | 26.55 |
| Solyc09g091220.1.1 | Tomato | cytosol | 26.18 | 26.38 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 25.19 | 26.37 |
| KRH11341 | Soybean | cytosol, plastid | 24.94 | 25.45 |
| KRH20939 | Soybean | cytosol, mitochondrion | 25.69 | 25.37 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 21.95 | 25.21 |
| Bra014991.1-P | Field mustard | cytosol | 22.94 | 24.86 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 14.96 | 24.69 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 21.95 | 24.51 |
| AT3G23880.1 | Thale cress | cytosol | 21.7 | 23.9 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 21.95 | 23.72 |
| Solyc12g099550.1.1 | Tomato | cytosol | 19.7 | 23.44 |
| Solyc01g008660.2.1 | Tomato | cytosol | 19.95 | 23.26 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 22.69 | 23.16 |
| KRH72048 | Soybean | cytosol | 19.95 | 22.66 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 21.45 | 21.66 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | UniProt:K4BWR1 | PFAM:PF00646 | PFscan:PS50181 |
| PANTHER:PTHR44355 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc05g007360.1 | EnsemblPlants:Solyc05g007360.1.1 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0002765C9B | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:1979365..1980742
Molecular Weight (calculated)
45672.2 Da
IEP (calculated)
7.659
GRAVY (calculated)
0.065
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFLSFCDW IHRVIHTVLL KFISGYDFIF TSLSTTTEII IPNDILTDIL LRLPLKSLLK CKSVSKSWHQ LISSPDFVKT HLKLKTDQLV LFPGINGKYK
101: FCSLTSIFNK QQLAQELLLI DSPNLKVFFV GSVNGLICLC NYSRETFIWN PTIKKSKKVL YPKLGTSFYN KYGFGYDESS DDYKAVFVDY YRNSYNDDVS
201: KMKTVINIYS LRTDSWTTLY DKLQGVFLLN HSGKFVKGKI YWAASARIGN YDVYNIISFD VADEIWESLE LPSCGEVNSK FKLGVVGSDL SVMYTCYLGT
301: ATSDVWIWKD CSVSWMKLFT MEYPRNTMLV MFSSSYFTFS IHLSKSEKGD ILLSLPGLIM IFDGSTKILE HTADVEGCNP AENYTESIVN PLMIPGSGSQ
401: C
101: FCSLTSIFNK QQLAQELLLI DSPNLKVFFV GSVNGLICLC NYSRETFIWN PTIKKSKKVL YPKLGTSFYN KYGFGYDESS DDYKAVFVDY YRNSYNDDVS
201: KMKTVINIYS LRTDSWTTLY DKLQGVFLLN HSGKFVKGKI YWAASARIGN YDVYNIISFD VADEIWESLE LPSCGEVNSK FKLGVVGSDL SVMYTCYLGT
301: ATSDVWIWKD CSVSWMKLFT MEYPRNTMLV MFSSSYFTFS IHLSKSEKGD ILLSLPGLIM IFDGSTKILE HTADVEGCNP AENYTESIVN PLMIPGSGSQ
401: C
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.