Factsheet for Solyc01g067030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	90.24	90.0
KRH11340	Soybean	cytosol, peroxisome, plastid	36.31	34.99
Solyc09g091710.1.1	Tomato	nucleus	37.67	34.58
Solyc05g007530.1.1	Tomato	cytosol	34.15	33.87
Solyc10g052710.1.1	Tomato	cytosol	34.42	33.25
KRH20939	Soybean	cytosol, mitochondrion	36.04	32.76
KRH35044	Soybean	cytosol, extracellular, golgi	31.71	32.59
KRH11341	Soybean	cytosol, plastid	34.69	32.57
Solyc09g091220.1.1	Tomato	cytosol	34.69	32.16
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	33.06	32.02
Solyc09g091690.1.1	Tomato	cytosol	33.6	31.96
Solyc05g007400.1.1	Tomato	cytosol	32.25	31.32
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	31.44	31.27
Solyc02g033040.2.1	Tomato	nucleus	28.73	31.18
VIT_18s0041g01100.t01	Wine grape	cytosol	20.33	30.86
Solyc10g068340.1.1	Tomato	cytosol	21.68	30.77
Solyc10g008450.1.1	Tomato	extracellular, vacuole	29.0	30.66
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	31.98	29.14
Solyc05g007360.1.1	Tomato	extracellular	31.44	28.93
Solyc01g008660.2.1	Tomato	cytosol	26.56	28.49
Solyc10g075010.1.1	Tomato	extracellular	27.1	28.17
KRH35047	Soybean	cytosol, peroxisome, plastid	29.81	27.99
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	29.27	27.98
Solyc09g072910.1.1	Tomato	plasma membrane	33.06	27.92
KRH72048	Soybean	cytosol	26.56	27.76
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	28.18	26.74
AT3G23880.1	Thale cress	cytosol	26.29	26.65
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	31.17	26.56
Solyc12g099550.1.1	Tomato	cytosol	23.85	26.11
VIT_18s0041g01090.t01	Wine grape	cytosol	27.91	25.94
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	27.91	25.5
Bra014991.1-P	Field mustard	cytosol	25.47	25.41

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:K4AWV2	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g067030.2
EnsemblPlants:Solyc01g067030.2.1	TIGRFAMs:TIGR01640	UniParc:UPI0002762D4D	:	:	:

Description

No Description!

Coordinates

chr1:-:75366631..75368093

Molecular Weight (calculated)

42468.5 Da

IEP (calculated)

5.385

GRAVY (calculated)

-0.082

Length

369 amino acids

Sequence
(BLAST)

001: MAHESEFVSL LPPEIISEIL VRLPVKSLLR MRSVSKSWLS LISTRQFIKT HLKFSTNKQD FDMLLLSTSC YEYSLKFYTC SLYAIMYQES PHVPDDLNFP
101: YKDPLVDYNF VGSCDGLLCI SSGVRDLFLW NPSIGKSKKL PISGSNVDCS SYLVYGIGYN ECQDDYKVVQ VVGSSHSEYG FQNEFRVYSV RTNSWKMIQE
201: YPGVIFCNDP AKFVNGRLNW IATRVSDKND SWFVFSLNLV DETYENVALP DLVYGNFDWE LGILGGNLCV FVDYYKVRMD VWVIKAYGLV ESWTKVASIP
301: YFRAIEHSPF PVFISHNDEI LLQDGSSLLI YNSTDNTFKH PQVQIHRGYE IQFSLYTRSL VSPHFVEEG

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.