Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
- mitochondrion 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 82.92 | 86.12 |
| PGSC0003DMT400093810 | Potato | plastid | 54.95 | 79.29 |
| Solyc05g007360.1.1 | Tomato | extracellular | 57.67 | 58.1 |
| Solyc05g007400.1.1 | Tomato | cytosol | 46.04 | 48.95 |
| Solyc05g007530.1.1 | Tomato | cytosol | 39.36 | 42.74 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 38.61 | 36.03 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 31.19 | 32.64 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 30.2 | 32.02 |
| Solyc02g033040.2.1 | Tomato | nucleus | 26.73 | 31.76 |
| Solyc09g091710.1.1 | Tomato | nucleus | 31.44 | 31.59 |
| Solyc10g075010.1.1 | Tomato | extracellular | 26.98 | 30.7 |
| Solyc10g052710.1.1 | Tomato | cytosol | 28.71 | 30.37 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 29.7 | 29.63 |
| Solyc10g068340.1.1 | Tomato | cytosol | 19.06 | 29.62 |
| Solyc01g067030.2.1 | Tomato | extracellular | 25.5 | 27.91 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 24.75 | 26.11 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 28.22 | 26.09 |
| Solyc09g091220.1.1 | Tomato | cytosol | 25.25 | 25.63 |
| KRH20939 | Soybean | cytosol, mitochondrion | 25.74 | 25.62 |
| KRH11341 | Soybean | cytosol, plastid | 24.5 | 25.19 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 22.28 | 25.07 |
| Solyc09g091690.1.1 | Tomato | cytosol | 23.76 | 24.74 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 21.04 | 24.36 |
| AT3G23880.1 | Thale cress | cytosol | 21.78 | 24.18 |
| KRH72048 | Soybean | cytosol | 20.79 | 23.8 |
| Bra014991.1-P | Field mustard | cytosol | 21.78 | 23.78 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 21.78 | 22.39 |
| Solyc12g099550.1.1 | Tomato | cytosol | 18.56 | 22.26 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 13.37 | 22.22 |
| Solyc01g008660.2.1 | Tomato | cytosol | 18.56 | 21.8 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 19.31 | 21.02 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 20.3 | 20.65 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 | UniProt:K4BWR3 | PFAM:PF00646 | PFAM:PF07734 |
| PFscan:PS50181 | PANTHER:PTHR44355 | SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc05g007380.1 | EnsemblPlants:Solyc05g007380.1.1 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0002765C9D | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:1989134..1990348
Molecular Weight (calculated)
46930.7 Da
IEP (calculated)
8.699
GRAVY (calculated)
-0.022
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFLAFRNW IYRTLLFQFL FSWYRFIFTT NRHFIFTTNN DSILPNEIIT DIFLRLPTKS LLKCKCVSKS WHQLISSPDF VNIHLKLNKH HTVLFPGYIE
101: NIRFCSLRPL FNKQHLTQEL LYHMVPPCSP PFFVGSVNGL ICLFNRRGDT YIWNPIIRKS KKLLKSSWGT SRYTKYGFAY DESRNEYKVL FIDHCGDSNY
201: GVLSNLRVVV NIYSSRTDSW TTLHDPPKEI LLLNYRGKFI NGKIYWAAST GIHDNYVRNI IYFDVASDTW GSLELPVCGE EVFNIKLGVV DSELSVLYTC
301: KAGTTSDVWI LKDRSVNVSW MKQFTIEYPL NAVLFGFDSP VYTFSIYLNL SDNDDILLLM PGKIMIFDGS TKKLKHTTIV KECNTAEIYT AEIYGESMVN
401: PLSL
101: NIRFCSLRPL FNKQHLTQEL LYHMVPPCSP PFFVGSVNGL ICLFNRRGDT YIWNPIIRKS KKLLKSSWGT SRYTKYGFAY DESRNEYKVL FIDHCGDSNY
201: GVLSNLRVVV NIYSSRTDSW TTLHDPPKEI LLLNYRGKFI NGKIYWAAST GIHDNYVRNI IYFDVASDTW GSLELPVCGE EVFNIKLGVV DSELSVLYTC
301: KAGTTSDVWI LKDRSVNVSW MKQFTIEYPL NAVLFGFDSP VYTFSIYLNL SDNDDILLLM PGKIMIFDGS TKKLKHTTIV KECNTAEIYT AEIYGESMVN
401: PLSL
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.