Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030295 | Potato | cytosol | 43.22 | 86.87 |
| Solyc01g067030.2.1 | Tomato | extracellular | 32.16 | 34.69 |
| Solyc09g091710.1.1 | Tomato | nucleus | 34.42 | 34.08 |
| Solyc09g091690.1.1 | Tomato | cytosol | 32.91 | 33.76 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 31.41 | 33.69 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 32.41 | 33.68 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 29.4 | 33.52 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.17 | 32.51 |
| Solyc10g052710.1.1 | Tomato | cytosol | 30.65 | 31.94 |
| Solyc10g068340.1.1 | Tomato | cytosol | 20.35 | 31.15 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 28.89 | 30.18 |
| Solyc05g007530.1.1 | Tomato | cytosol | 27.89 | 29.84 |
| Solyc02g033040.2.1 | Tomato | nucleus | 24.62 | 28.82 |
| KRH11341 | Soybean | cytosol, plastid | 27.64 | 27.99 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 26.88 | 27.72 |
| Solyc10g075010.1.1 | Tomato | extracellular | 24.62 | 27.61 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 24.87 | 27.58 |
| Solyc05g007400.1.1 | Tomato | cytosol | 26.13 | 27.37 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 16.33 | 26.75 |
| AT3G23880.1 | Thale cress | cytosol | 24.37 | 26.65 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.13 | 26.46 |
| Solyc05g007360.1.1 | Tomato | extracellular | 26.38 | 26.18 |
| Solyc01g008660.2.1 | Tomato | cytosol | 22.61 | 26.16 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 25.88 | 25.94 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 26.38 | 25.93 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 28.39 | 25.86 |
| Bra014991.1-P | Field mustard | cytosol | 23.87 | 25.68 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 25.63 | 25.25 |
| Solyc12g099550.1.1 | Tomato | cytosol | 21.36 | 25.22 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 24.62 | 25.19 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 27.14 | 24.94 |
| KRH72048 | Soybean | cytosol | 21.86 | 24.65 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001810 |
| UniProt:K4CWE8 | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF28 | SMART:SM00256 |
| SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc09g091220.1 | EnsemblPlants:Solyc09g091220.1.1 | TIGRFAMs:TIGR01640 | TMHMM:TMhelix | UniParc:UPI000276B394 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:70525090..70526286
Molecular Weight (calculated)
44967.9 Da
IEP (calculated)
7.614
GRAVY (calculated)
-0.102
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTNNEMKNS IPNDQTHTPS FPLEIIIEIL SRLPVKSLLK FKSVSKSWLS LISSTHFSKS HLNISSRNNK LSHKNLLLLS MYLPHTLYSC TLYSTLHEKS
101: NLCVNKLNFP WNPSNIIAGV SLCNGLFLIC IGMYNNNLYL WNPSTRKNKI LPFSSCTKYP RCDVTYGFGY DESNHDFKVV EVFGVYGVHY VYGANIKIYG
201: LRSNSWKNMK KYSNALFSSD SGVFLNKCVH WAVAHNDGSC IYWDIVSLNL ENEKFGSLAL PSFGGFDGSR LLGDSCDFEL GTMNWSLGKL GDFLCLFCDY
301: YKVKLDVWIM KEYNAEGCWM KSVSLPYVKG VGPCISPLWI SDISGEVLLH DGTRVMVYDS RNDEYKRVEI CEMNGDDGVG AATVYAESLV SPYLDSVR
101: NLCVNKLNFP WNPSNIIAGV SLCNGLFLIC IGMYNNNLYL WNPSTRKNKI LPFSSCTKYP RCDVTYGFGY DESNHDFKVV EVFGVYGVHY VYGANIKIYG
201: LRSNSWKNMK KYSNALFSSD SGVFLNKCVH WAVAHNDGSC IYWDIVSLNL ENEKFGSLAL PSFGGFDGSR LLGDSCDFEL GTMNWSLGKL GDFLCLFCDY
301: YKVKLDVWIM KEYNAEGCWM KSVSLPYVKG VGPCISPLWI SDISGEVLLH DGTRVMVYDS RNDEYKRVEI CEMNGDDGVG AATVYAESLV SPYLDSVR
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.