Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 61.15 | 58.25 |
| Solyc09g091710.1.1 | Tomato | nucleus | 52.49 | 49.75 |
| Solyc02g033040.2.1 | Tomato | nucleus | 40.42 | 45.29 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 55.38 | 42.89 |
| Solyc10g052710.1.1 | Tomato | cytosol | 41.47 | 41.36 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 41.73 | 41.19 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 40.16 | 37.78 |
| Solyc05g007530.1.1 | Tomato | cytosol | 36.75 | 37.63 |
| Solyc10g075010.1.1 | Tomato | extracellular | 34.65 | 37.18 |
| Solyc10g068340.1.1 | Tomato | cytosol | 25.2 | 36.92 |
| Solyc05g007400.1.1 | Tomato | cytosol | 35.43 | 35.53 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 39.37 | 34.32 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 33.33 | 33.16 |
| Solyc01g067030.2.1 | Tomato | extracellular | 32.02 | 33.06 |
| KRH11341 | Soybean | cytosol, plastid | 32.81 | 31.81 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 35.96 | 31.64 |
| Solyc09g091690.1.1 | Tomato | cytosol | 31.76 | 31.19 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.07 | 31.03 |
| Solyc05g007360.1.1 | Tomato | extracellular | 32.28 | 30.67 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 28.87 | 30.64 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 30.97 | 30.33 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 32.02 | 30.2 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 28.61 | 29.38 |
| Bra014991.1-P | Field mustard | cytosol | 28.08 | 28.92 |
| Solyc09g091220.1.1 | Tomato | cytosol | 30.18 | 28.89 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.37 | 28.81 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 25.98 | 28.37 |
| AT3G23880.1 | Thale cress | cytosol | 27.03 | 28.3 |
| Solyc01g008660.2.1 | Tomato | cytosol | 24.93 | 27.62 |
| Solyc12g099550.1.1 | Tomato | cytosol | 24.41 | 27.6 |
| KRH72048 | Soybean | cytosol | 25.2 | 27.2 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 27.56 | 26.72 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.77 | 25.69 |
Protein Annotations
| EnsemblPlants:Solyc09g083230.1.1 | EnsemblPlantsGene:Solyc09g083230.1 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| PFAM:PF00646 | PFscan:PS50181 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000276C53F |
| UniProt:K4CVU9 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:68890249..68891394
Molecular Weight (calculated)
43781.8 Da
IEP (calculated)
6.907
GRAVY (calculated)
-0.093
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFKEDEILQ KRGKSTEIQS ICSEASVFSM PNLPEELITE IMLRLPVKSL LQFRSVSKSW LSLISTSHFV KTHLLLSASN KDYIHHGVIS KPSNTSRGVK
101: DCSVSSLLYD SVPESFELDN PGKNPNAFPL LVGSVNGLIC LAINLFYGFD CFIIWNPSIK KYKKLPYEEH IVPYFTFGFA YDEFEDDYKI VGIFPIYNYA
201: SLCRVEVKIY SLKSDSWKRV KNYKGAELLG DSAKFVNGKF HWLDKHWNII SMDLAGEKWE EVDQPCCFKG CGFLKLGVFE SDLSVFCNYA WTHVDVWVMK
301: EYGVKESWTK MFTVKSPEDS GGRIFYPIIL MSNEGEILLK FGSRFVKYNP KDDSIRYLDV TKLAPCLEVQ IYVKSLVCPF Y
101: DCSVSSLLYD SVPESFELDN PGKNPNAFPL LVGSVNGLIC LAINLFYGFD CFIIWNPSIK KYKKLPYEEH IVPYFTFGFA YDEFEDDYKI VGIFPIYNYA
201: SLCRVEVKIY SLKSDSWKRV KNYKGAELLG DSAKFVNGKF HWLDKHWNII SMDLAGEKWE EVDQPCCFKG CGFLKLGVFE SDLSVFCNYA WTHVDVWVMK
301: EYGVKESWTK MFTVKSPEDS GGRIFYPIIL MSNEGEILLK FGSRFVKYNP KDDSIRYLDV TKLAPCLEVQ IYVKSLVCPF Y
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.