Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 58.25 | 61.15 |
| PGSC0003DMT400076275 | Potato | nucleus | 52.5 | 52.24 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 60.5 | 49.19 |
| PGSC0003DMT400009785 | Potato | cytosol | 45.25 | 47.76 |
| PGSC0003DMT400080382 | Potato | golgi | 44.5 | 47.34 |
| PGSC0003DMT400055337 | Potato | plastid | 46.75 | 46.06 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 37.75 | 46.04 |
| PGSC0003DMT400016504 | Potato | cytosol | 44.0 | 45.6 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 43.0 | 45.5 |
| PGSC0003DMT400080369 | Potato | nucleus | 45.25 | 45.36 |
| PGSC0003DMT400009709 | Potato | cytosol | 41.75 | 44.18 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 43.25 | 44.13 |
| PGSC0003DMT400096151 | Potato | cytosol | 43.0 | 43.22 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 37.75 | 42.78 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 35.0 | 42.68 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 34.0 | 42.63 |
| PGSC0003DMT400085500 | Potato | cytosol | 40.75 | 42.56 |
| PGSC0003DMT400092235 | Potato | cytosol | 35.0 | 42.3 |
| PGSC0003DMT400031977 | Potato | cytosol | 41.25 | 41.56 |
| PGSC0003DMT400045556 | Potato | cytosol | 47.5 | 41.13 |
| PGSC0003DMT400095263 | Potato | cytosol | 27.75 | 40.81 |
| PGSC0003DMT400090333 | Potato | cytosol | 30.5 | 39.35 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 36.5 | 39.25 |
| PGSC0003DMT400094202 | Potato | cytosol | 28.0 | 39.02 |
| PGSC0003DMT400096925 | Potato | cytosol | 24.5 | 38.89 |
| PGSC0003DMT400067303 | Potato | extracellular | 35.25 | 38.52 |
| PGSC0003DMT400076284 | Potato | cytosol | 40.75 | 38.44 |
| PGSC0003DMT400059327 | Potato | cytosol | 34.5 | 37.4 |
| PGSC0003DMT400090382 | Potato | cytosol | 34.75 | 36.2 |
| PGSC0003DMT400076282 | Potato | nucleus | 14.25 | 36.08 |
| PGSC0003DMT400097507 | Potato | cytosol | 21.25 | 35.71 |
| PGSC0003DMT400059330 | Potato | extracellular | 33.75 | 35.71 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 33.0 | 35.68 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 33.25 | 34.73 |
| PGSC0003DMT400034123 | Potato | golgi | 31.25 | 34.06 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.75 | 33.25 |
| PGSC0003DMT400093810 | Potato | plastid | 23.0 | 32.86 |
| PGSC0003DMT400076274 | Potato | cytosol | 31.75 | 32.82 |
| KRH11341 | Soybean | cytosol, plastid | 31.5 | 32.06 |
| PGSC0003DMT400025788 | Potato | cytosol | 31.25 | 31.89 |
| PGSC0003DMT400059329 | Potato | vacuole | 31.75 | 31.67 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 26.5 | 31.64 |
| PGSC0003DMT400076216 | Potato | cytosol | 30.5 | 31.36 |
| PGSC0003DMT400080292 | Potato | cytosol | 15.5 | 31.31 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 21.5 | 31.16 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.25 | 30.04 |
| PGSC0003DMT400053926 | Potato | cytosol | 19.75 | 30.04 |
| PGSC0003DMT400088797 | Potato | cytosol | 18.25 | 29.67 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 26.5 | 29.53 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 27.25 | 29.46 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 27.0 | 29.19 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 13.0 | 28.89 |
| Bra014991.1-P | Field mustard | cytosol | 26.0 | 28.11 |
| AT3G23880.1 | Thale cress | cytosol | 25.5 | 28.02 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 29.25 | 27.99 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 27.5 | 27.71 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.5 | 26.97 |
| PGSC0003DMT400059334 | Potato | plastid | 23.75 | 26.39 |
| PGSC0003DMT400058829 | Potato | cytosol | 24.0 | 26.37 |
| PGSC0003DMT400012000 | Potato | plastid | 24.25 | 26.22 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 12.25 | 25.93 |
| PGSC0003DMT400016096 | Potato | cytosol | 13.25 | 25.6 |
| KRH72048 | Soybean | cytosol | 22.5 | 25.5 |
| PGSC0003DMT400016099 | Potato | cytosol | 22.75 | 24.73 |
| PGSC0003DMT400016057 | Potato | cytosol | 22.75 | 24.4 |
| PGSC0003DMT400046369 | Potato | cytosol | 24.5 | 24.26 |
| PGSC0003DMT400080293 | Potato | nucleus | 14.75 | 23.23 |
| PGSC0003DMT400030295 | Potato | cytosol | 10.5 | 21.21 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102590482 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M1A696 | PFAM:PF00646 |
| EnsemblPlantsGene:PGSC0003DMG400006090 | PGSC:PGSC0003DMG400006090 | EnsemblPlants:PGSC0003DMT400015598 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000295B237 | RefSeq:XP_006362185.1 | SEG:seg |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006090]
Coordinates
chr9:+:55247742..55252564
Molecular Weight (calculated)
46104.7 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.182
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRGDEVIP RHPKRSKPTN PAHFSSILSQ DSVLPMPNLP TELILEILLK LPVKSLLQFR SVSKSWLSLI SNPEFVKAHL SLSASNKNYT HHGVMVKVST
101: KSVFVVKDCS LRSLLYHPVT EAFDLDYPGK SPNHYLWFVG VVNGLICFSI RLFDGLYDLF LWNPSIRKYK KLPNFRLDVS RRYYLDGHVN FKFGFAYNEL
201: QDDYKVVGIF PIYTRGHLSR VEVKIYSLKR DSWRCIDDFR RQERLAGSAK FVNEKLHWLD KQWNIISIDL ADEKWAELER PSCFKQYVFL KLGVLGGDLS
301: ASFIYASSHA DVWVMKEYGV KESWTKIFTT KSPGYPMAHP LHPTILTSNE GELLCLFGGR LMKYNTKDNM ISYLDVTNFG PCLEAEIYVE SLICPFSQQG
101: KSVFVVKDCS LRSLLYHPVT EAFDLDYPGK SPNHYLWFVG VVNGLICFSI RLFDGLYDLF LWNPSIRKYK KLPNFRLDVS RRYYLDGHVN FKFGFAYNEL
201: QDDYKVVGIF PIYTRGHLSR VEVKIYSLKR DSWRCIDDFR RQERLAGSAK FVNEKLHWLD KQWNIISIDL ADEKWAELER PSCFKQYVFL KLGVLGGDLS
301: ASFIYASSHA DVWVMKEYGV KESWTKIFTT KSPGYPMAHP LHPTILTSNE GELLCLFGGR LMKYNTKDNM ISYLDVTNFG PCLEAEIYVE SLICPFSQQG
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.