Factsheet for PGSC0003DMT400088797

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080292	Potato	cytosol	51.22	63.64
PGSC0003DMT400093810	Potato	plastid	69.92	61.43
PGSC0003DMT400053926	Potato	cytosol	45.53	42.59
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	30.49	41.67
PGSC0003DMT400059329	Potato	vacuole	64.63	39.65
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	38.62	34.42
PGSC0003DMT400059327	Potato	cytosol	49.19	32.79
PGSC0003DMT400090382	Potato	cytosol	50.0	32.03
PGSC0003DMT400067303	Potato	extracellular	44.72	30.05
PGSC0003DMT400097507	Potato	cytosol	27.64	28.57
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	43.09	28.49
PGSC0003DMT400053922	Potato	extracellular, golgi	47.97	28.23
PGSC0003DMT400059334	Potato	plastid	40.65	27.78
PGSC0003DMT400076282	Potato	nucleus	17.07	26.58
PGSC0003DMT400059330	Potato	extracellular	38.62	25.13
PGSC0003DMT400080293	Potato	nucleus	25.2	24.41
PGSC0003DMT400092235	Potato	cytosol	31.71	23.57
PGSC0003DMT400094202	Potato	cytosol	27.24	23.34
PGSC0003DMT400090333	Potato	cytosol	29.27	23.23
VIT_18s0041g01100.t01	Wine grape	cytosol	21.95	22.22
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	30.49	21.25
PGSC0003DMT400016504	Potato	cytosol	32.11	20.47
PGSC0003DMT400080382	Potato	golgi	30.89	20.21
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	30.49	19.84
PGSC0003DMT400009785	Potato	cytosol	30.49	19.79
PGSC0003DMT400009709	Potato	cytosol	29.67	19.31
PGSC0003DMT400030295	Potato	cytosol	15.45	19.19
PGSC0003DMT400035091	Potato	mitochondrion	30.49	19.13
PGSC0003DMT400055337	Potato	plastid	31.3	18.97
PGSC0003DMT400076275	Potato	nucleus	30.89	18.91
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	24.8	18.6
PGSC0003DMT400031977	Potato	cytosol	29.67	18.39
PGSC0003DMT400080369	Potato	nucleus	29.67	18.3
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	29.67	18.25
PGSC0003DMT400096151	Potato	cytosol	29.27	18.09
PGSC0003DMT400016096	Potato	cytosol	15.04	17.87
PGSC0003DMT400080239	Potato	cytosol, plastid	22.36	17.24
PGSC0003DMT400076284	Potato	cytosol	29.67	17.22
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	25.2	16.76
PGSC0003DMT400006240	Potato	mitochondrion	21.95	16.46
KRH35044	Soybean	cytosol, extracellular, golgi	23.58	16.16
PGSC0003DMT400076216	Potato	cytosol	25.2	15.94
PGSC0003DMT400096925	Potato	cytosol	16.26	15.87
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	21.54	15.82
PGSC0003DMT400095263	Potato	cytosol	17.48	15.81
PGSC0003DMT400076274	Potato	cytosol	24.8	15.76
PGSC0003DMT400045556	Potato	cytosol	28.46	15.15
PGSC0003DMT400085500	Potato	cytosol	23.58	15.14
KRH11341	Soybean	cytosol, plastid	23.98	15.01
KRH11340	Soybean	cytosol, peroxisome, plastid	23.17	14.88
PGSC0003DMT400012000	Potato	plastid	22.36	14.86
PGSC0003DMT400015653	Potato	cytosol, plastid	29.67	14.84
KRH20939	Soybean	cytosol, mitochondrion	23.58	14.29
PGSC0003DMT400034123	Potato	golgi	21.14	14.17
PGSC0003DMT400025788	Potato	cytosol	22.36	14.03
KRH72048	Soybean	cytosol	19.92	13.88
Bra014991.1-P	Field mustard	cytosol	20.33	13.51
KRH35047	Soybean	cytosol, peroxisome, plastid	21.54	13.49
AT3G23880.1	Thale cress	cytosol	19.92	13.46
PGSC0003DMT400058829	Potato	cytosol	19.92	13.46
PGSC0003DMT400016057	Potato	cytosol	20.33	13.4
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	19.51	12.97
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	19.51	12.97
PGSC0003DMT400046369	Potato	cytosol	19.92	12.13
VIT_18s0041g01090.t01	Wine grape	cytosol	19.11	11.84
PGSC0003DMT400016099	Potato	cytosol	16.67	11.14
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	6.5	8.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400088797	EnsemblPlantsGene:PGSC0003DMG400038368	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF07734	PGSC:PGSC0003DMG400038368	TIGRFAMs:TIGR01640	UniParc:UPI000295C771	UniProt:M1DGQ9	MapMan:35.2

Description

F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038368]

Coordinates

chr5:+:12938408..12939148

Molecular Weight (calculated)

27758.8 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.135

Length

246 amino acids

Sequence
(BLAST)

001: MKLLNSPWGT SFNTKYGFGY DDSRDDYKAL FIDHYHDFNN GEVYSVRVVV TIYSLRNDSW KTLHDQLQGI FLINHSGKFV NGMIYWIAST GIDDDDARNI
101: ISFDVANETW GSLEIPIHGE DHSNIKLGVV GSDLAVLYTC HICATTSDVW ILKDCRGNMS WTKRFTIEYP KYVVLYMFSS PNFTFSIHLR QSNKGDIILS
201: IRGLIILFDG STKKLEHIAA VGGYNPAETY AESIVNPLTI SGKNSA

Best Arabidopsis Sequence Match ( AT3G21410.1 )
(BLAST)

001: MAWFQHVKLY IASCINLFTK IQKPYLSMAM DSKECSLLPF ELFEEILCRV PTKSLLRLKL TCKRWLALFN DKRFIYKHLA LVREHIIRTN QMVKIINPVV
101: GACSSFSLPN KFQVKGEIYT MVPCDGLLLC IFETGSMAVW NPCLNQVRWI FLLNPSFRGC SCYGIGYDGL SRDSYKILRF VNGVFTKNEY ANTGSYKPEV
201: DIYELKSNSW KTFKVSLDWH VVLRCKGLSL KGNMYWIAKW NRKPDIFIQS FNFSTETFEP LCSLPVRYDV HNVVALSAFK GDNLSLLHQS KETSKIDVWV
301: TNKVKNGVSI LWTKLFSVTR PDLPVLLAFE NLSYPVHFID KNNRIVVCCE EVLADKRNVA VNIYVIGEDE IKSQDEIEQH QLGFSWPFIS GYTYLPSLVP
401: VPSSEDNTPE

Arabidopsis Description

FBW1F-box/WD-40 repeat-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSN6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.