Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080292 | Potato | cytosol | 30.28 | 55.05 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 26.94 | 53.89 |
| PGSC0003DMT400053926 | Potato | cytosol | 38.06 | 52.09 |
| PGSC0003DMT400059329 | Potato | vacuole | 54.17 | 48.63 |
| PGSC0003DMT400088797 | Potato | cytosol | 27.78 | 40.65 |
| PGSC0003DMT400093810 | Potato | plastid | 31.11 | 40.0 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 45.83 | 39.47 |
| PGSC0003DMT400090382 | Potato | cytosol | 40.83 | 38.28 |
| PGSC0003DMT400059327 | Potato | cytosol | 37.78 | 36.86 |
| PGSC0003DMT400067303 | Potato | extracellular | 35.28 | 34.7 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 35.28 | 34.14 |
| PGSC0003DMT400059330 | Potato | extracellular | 31.94 | 30.42 |
| PGSC0003DMT400095263 | Potato | cytosol | 22.5 | 29.78 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 21.67 | 28.26 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 27.5 | 28.05 |
| PGSC0003DMT400076275 | Potato | nucleus | 28.89 | 25.87 |
| PGSC0003DMT400080382 | Potato | golgi | 26.94 | 25.8 |
| PGSC0003DMT400009709 | Potato | cytosol | 26.67 | 25.4 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 22.5 | 25.39 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 23.06 | 25.3 |
| PGSC0003DMT400096925 | Potato | cytosol | 17.5 | 25.0 |
| PGSC0003DMT400055337 | Potato | plastid | 28.06 | 24.88 |
| PGSC0003DMT400096151 | Potato | cytosol | 27.5 | 24.87 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 25.56 | 24.86 |
| PGSC0003DMT400009785 | Potato | cytosol | 26.11 | 24.8 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 25.56 | 24.34 |
| PGSC0003DMT400031977 | Potato | cytosol | 26.39 | 23.93 |
| PGSC0003DMT400092235 | Potato | cytosol | 21.94 | 23.87 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 26.39 | 23.75 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 25.83 | 23.72 |
| PGSC0003DMT400016504 | Potato | cytosol | 25.28 | 23.58 |
| PGSC0003DMT400080369 | Potato | nucleus | 25.28 | 22.81 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 20.56 | 22.56 |
| PGSC0003DMT400045556 | Potato | cytosol | 28.89 | 22.51 |
| PGSC0003DMT400076284 | Potato | cytosol | 26.39 | 22.41 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 20.56 | 22.09 |
| PGSC0003DMT400076274 | Potato | cytosol | 23.06 | 21.45 |
| PGSC0003DMT400085500 | Potato | cytosol | 22.78 | 21.41 |
| PGSC0003DMT400034123 | Potato | golgi | 21.67 | 21.25 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 28.61 | 20.93 |
| PGSC0003DMT400076216 | Potato | cytosol | 22.5 | 20.82 |
| PGSC0003DMT400025788 | Potato | cytosol | 21.67 | 19.9 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 21.11 | 19.84 |
| Bra014991.1-P | Field mustard | cytosol | 20.28 | 19.73 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 10.28 | 19.58 |
| KRH11341 | Soybean | cytosol, plastid | 21.11 | 19.34 |
| AT3G23880.1 | Thale cress | cytosol | 19.44 | 19.23 |
| KRH72048 | Soybean | cytosol | 18.61 | 18.98 |
| KRH20939 | Soybean | cytosol, mitochondrion | 21.39 | 18.97 |
| PGSC0003DMT400090333 | Potato | cytosol | 16.11 | 18.71 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 18.61 | 18.66 |
| PGSC0003DMT400094202 | Potato | cytosol | 14.72 | 18.47 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 12.22 | 18.11 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 18.33 | 17.84 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 18.33 | 17.84 |
| PGSC0003DMT400097507 | Potato | cytosol | 11.67 | 17.65 |
| PGSC0003DMT400058829 | Potato | cytosol | 17.5 | 17.31 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 18.89 | 17.3 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 18.89 | 17.13 |
| PGSC0003DMT400012000 | Potato | plastid | 17.5 | 17.03 |
| PGSC0003DMT400016096 | Potato | cytosol | 9.72 | 16.91 |
| PGSC0003DMT400016057 | Potato | cytosol | 17.22 | 16.62 |
| PGSC0003DMT400046369 | Potato | cytosol | 18.06 | 16.09 |
| PGSC0003DMT400016099 | Potato | cytosol | 16.11 | 15.76 |
| PGSC0003DMT400080293 | Potato | nucleus | 8.61 | 12.2 |
| PGSC0003DMT400030295 | Potato | cytosol | 5.83 | 10.61 |
| PGSC0003DMT400076282 | Potato | nucleus | 4.44 | 10.13 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001810 |
| UniProt:M1C447 | PFAM:PF00646 | EnsemblPlantsGene:PGSC0003DMG400023054 | PGSC:PGSC0003DMG400023054 | EnsemblPlants:PGSC0003DMT400059334 | PFscan:PS50181 |
| PANTHER:PTHR44355 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002967304 | SEG:seg |
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023054]
Coordinates
chr5:-:5412584..5416206
Molecular Weight (calculated)
40384.7 Da
IEP (calculated)
7.355
GRAVY (calculated)
0.105
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLKPTFAA TVQATLAATT ASTTIDIQHG THLEKHPAAM FPFVSFRDWI HQAVHIILLK FFSWYNFIFT PTCTTSDSEI PNEIITNILL RLPPKSLLKC
101: MSVSKSWHQL ISSPDFVNTH LKLNSIHRVL FPGINGNFNF SSLLPSTVQM GSIALISSVV GTANGLICLY NYKGEIYIWN PTISKSKKLL NLPWGSSFYM
201: KYGFGYDESR DDYKALFIDD ESDLTYVVNI YSLRTDSWKT LHDQLKGVFL INLPAKFVNG KLYWTASTSF CDINVRKIIS YPFSTHLRHS TKGDILLSLP
301: GVILIFGGST RKLEHTVDVV GCDPVEFYAG SIVNPLRFLE VEADSILAAE CMDQNDEALS
101: MSVSKSWHQL ISSPDFVNTH LKLNSIHRVL FPGINGNFNF SSLLPSTVQM GSIALISSVV GTANGLICLY NYKGEIYIWN PTISKSKKLL NLPWGSSFYM
201: KYGFGYDESR DDYKALFIDD ESDLTYVVNI YSLRTDSWKT LHDQLKGVFL INLPAKFVNG KLYWTASTSF CDINVRKIIS YPFSTHLRHS TKGDILLSLP
301: GVILIFGGST RKLEHTVDVV GCDPVEFYAG SIVNPLRFLE VEADSILAAE CMDQNDEALS
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.