Factsheet for PGSC0003DMT400080369

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055337	Potato	plastid	59.4	58.37
PGSC0003DMT400076275	Potato	nucleus	58.4	57.96
PGSC0003DMT400096151	Potato	cytosol	50.63	50.75
PGSC0003DMT400085500	Potato	cytosol	46.37	48.3
PGSC0003DMT400090333	Potato	cytosol	37.09	47.74
PGSC0003DMT400080382	Potato	golgi	44.86	47.61
PGSC0003DMT400009785	Potato	cytosol	44.86	47.23
PGSC0003DMT400094202	Potato	cytosol	33.83	47.04
PGSC0003DMT400006240	Potato	mitochondrion	38.1	46.34
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	43.61	46.03
PGSC0003DMT400009709	Potato	cytosol	43.36	45.77
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	37.34	45.43
PGSC0003DMT400092235	Potato	cytosol	37.59	45.32
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	45.36	45.25
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	38.85	43.91
PGSC0003DMT400016504	Potato	cytosol	42.36	43.78
PGSC0003DMT400095263	Potato	cytosol	29.82	43.75
PGSC0003DMT400035091	Potato	mitochondrion	42.86	43.62
PGSC0003DMT400080239	Potato	cytosol, plastid	34.59	43.26
PGSC0003DMT400076282	Potato	nucleus	16.79	42.41
PGSC0003DMT400097507	Potato	cytosol	25.06	42.02
PGSC0003DMT400031977	Potato	cytosol	41.6	41.81
PGSC0003DMT400076284	Potato	cytosol	41.35	38.92
PGSC0003DMT400067303	Potato	extracellular	34.59	37.7
PGSC0003DMT400045556	Potato	cytosol	43.36	37.45
PGSC0003DMT400096925	Potato	cytosol	23.56	37.3
PGSC0003DMT400059327	Potato	cytosol	34.34	37.13
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	34.59	37.1
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.83	36.49
PGSC0003DMT400090382	Potato	cytosol	34.59	35.94
PGSC0003DMT400015653	Potato	cytosol, plastid	42.86	34.76
PGSC0003DMT400076274	Potato	cytosol	33.33	34.37
KRH11340	Soybean	cytosol, peroxisome, plastid	32.08	33.42
PGSC0003DMT400080292	Potato	cytosol	16.54	33.33
PGSC0003DMT400059330	Potato	extracellular	31.58	33.33
PGSC0003DMT400034123	Potato	golgi	30.58	33.24
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	27.32	32.54
PGSC0003DMT400076216	Potato	cytosol	31.58	32.39
KRH11341	Soybean	cytosol, plastid	31.83	32.32
KRH20939	Soybean	cytosol, mitochondrion	32.83	32.27
PGSC0003DMT400093810	Potato	plastid	22.06	31.43
PGSC0003DMT400025788	Potato	cytosol	30.58	31.12
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	28.57	30.81
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	28.57	30.81
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	21.3	30.8
PGSC0003DMT400059329	Potato	vacuole	30.83	30.67
VIT_18s0041g01100.t01	Wine grape	cytosol	18.3	30.04
PGSC0003DMT400088797	Potato	cytosol	18.3	29.67
PGSC0003DMT400058829	Potato	cytosol	26.07	28.57
AT3G23880.1	Thale cress	cytosol	25.56	28.02
PGSC0003DMT400016096	Potato	cytosol	14.54	28.02
KRH35044	Soybean	cytosol, extracellular, golgi	24.81	27.58
Bra014991.1-P	Field mustard	cytosol	25.56	27.57
PGSC0003DMT400012000	Potato	plastid	25.56	27.57
PGSC0003DMT400053922	Potato	extracellular, golgi	28.82	27.51
PGSC0003DMT400053926	Potato	cytosol	18.05	27.38
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	12.28	27.22
VIT_18s0041g01090.t01	Wine grape	cytosol	27.07	27.2
PGSC0003DMT400016099	Potato	cytosol	24.56	26.63
PGSC0003DMT400016057	Potato	cytosol	24.56	26.27
PGSC0003DMT400059334	Potato	plastid	22.81	25.28
PGSC0003DMT400030295	Potato	cytosol	12.53	25.25
PGSC0003DMT400046369	Potato	cytosol	25.31	25.0
KRH35047	Soybean	cytosol, peroxisome, plastid	24.31	24.68
KRH72048	Soybean	cytosol	21.8	24.65
PGSC0003DMT400080293	Potato	nucleus	14.79	23.23
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.28	21.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400080369	EnsemblPlantsGene:PGSC0003DMG400031292	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFscan:PS50181	PGSC:PGSC0003DMG400031292	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000295E13D	UniProt:M1D3E6	MapMan:19.2.2.8.1.4.6	:

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031292]

Coordinates

chr9:-:58851437..58854176

Molecular Weight (calculated)

46052.4 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.121

Length

399 amino acids

Sequence
(BLAST)

001: MEFHVYEASN QHPKRRKPIN HGKDSIFITP FYLPSELINK ILLNLPVKSL MKFKSVSKSW LFLISSAEFI NTHLSLSVNN KDFKRHKLIL RFDPPYCSLQ
101: DCSFSSLFSC SVTEAFDLDY PVKNCNKFLS IVGSVNGLIC VAIEEKYLFI WNPSIRKCNK LPDSRASMNG NSCYMYGFGY DEIHDDYRVV AGFRSWNSCK
201: VDIYSVNKDS WRSIDDFPSG VLFMKSGVFV NGKLHWAYSA VQSVISYDAW SIISINLPDG KWGKVEQPCY GEGVFDFTMG VLGGDLSVFC NYERIRADVW
301: VLKEYGVKES WTKMFTINLP YDPVGYQCCP LFCLSNKGGI LFQFGSTFMI YNPKDDSIRY SEITCYNAFY EAYIFIESLV WPILTKPRMQ QQPRLEKLR

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.