Factsheet for PGSC0003DMT400006240

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	82.62	71.69
PGSC0003DMT400035091	Potato	mitochondrion	81.4	68.11
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	71.04	57.53
PGSC0003DMT400076275	Potato	nucleus	51.22	41.79
PGSC0003DMT400080382	Potato	golgi	44.82	39.1
PGSC0003DMT400076282	Potato	nucleus	18.6	38.61
PGSC0003DMT400016504	Potato	cytosol	45.12	38.34
PGSC0003DMT400009785	Potato	cytosol	44.21	38.26
PGSC0003DMT400080369	Potato	nucleus	46.34	38.1
PGSC0003DMT400055337	Potato	plastid	46.04	37.19
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	36.89	36.89
PGSC0003DMT400009709	Potato	cytosol	41.16	35.71
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	42.68	35.0
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	36.59	33.99
PGSC0003DMT400031977	Potato	cytosol	40.85	33.75
PGSC0003DMT400096151	Potato	cytosol	39.63	32.66
PGSC0003DMT400092235	Potato	cytosol	32.62	32.33
PGSC0003DMT400080239	Potato	cytosol, plastid	31.4	32.29
PGSC0003DMT400085500	Potato	cytosol	37.5	32.11
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	36.28	31.99
PGSC0003DMT400059327	Potato	cytosol	35.98	31.98
PGSC0003DMT400076284	Potato	cytosol	40.85	31.6
PGSC0003DMT400067303	Potato	extracellular	34.76	31.15
PGSC0003DMT400090333	Potato	cytosol	29.27	30.97
PGSC0003DMT400015653	Potato	cytosol, plastid	46.34	30.89
PGSC0003DMT400095263	Potato	cytosol	25.61	30.88
PGSC0003DMT400045556	Potato	cytosol	42.99	30.52
PGSC0003DMT400094202	Potato	cytosol	26.52	30.31
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	34.15	30.27
PGSC0003DMT400059330	Potato	extracellular	34.45	29.89
PGSC0003DMT400090382	Potato	cytosol	34.45	29.43
KRH35044	Soybean	cytosol, extracellular, golgi	31.71	28.97
PGSC0003DMT400096925	Potato	cytosol	21.95	28.57
KRH11340	Soybean	cytosol, peroxisome, plastid	33.23	28.46
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	28.05	27.46
KRH20939	Soybean	cytosol, mitochondrion	33.84	27.34
KRH11341	Soybean	cytosol, plastid	32.62	27.23
PGSC0003DMT400076216	Potato	cytosol	32.01	26.99
PGSC0003DMT400059329	Potato	vacuole	32.93	26.93
PGSC0003DMT400097507	Potato	cytosol	19.51	26.89
PGSC0003DMT400076274	Potato	cytosol	31.71	26.87
PGSC0003DMT400025788	Potato	cytosol	32.01	26.79
PGSC0003DMT400080292	Potato	cytosol	16.16	26.77
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	29.88	26.49
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	29.88	26.49
PGSC0003DMT400034123	Potato	golgi	28.96	25.89
PGSC0003DMT400093810	Potato	plastid	21.95	25.71
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	21.34	25.36
KRH72048	Soybean	cytosol	27.13	25.21
KRH35047	Soybean	cytosol, peroxisome, plastid	30.18	25.19
VIT_18s0041g01090.t01	Wine grape	cytosol	29.27	24.18
PGSC0003DMT400053922	Potato	extracellular, golgi	29.57	23.21
VIT_18s0041g01100.t01	Wine grape	cytosol	17.07	23.05
PGSC0003DMT400012000	Potato	plastid	25.3	22.43
PGSC0003DMT400088797	Potato	cytosol	16.46	21.95
PGSC0003DMT400058829	Potato	cytosol	24.09	21.7
AT3G23880.1	Thale cress	cytosol	24.09	21.7
Bra014991.1-P	Field mustard	cytosol	24.09	21.35
PGSC0003DMT400046369	Potato	cytosol	26.22	21.29
PGSC0003DMT400080293	Potato	nucleus	16.46	21.26
PGSC0003DMT400030295	Potato	cytosol	12.8	21.21
PGSC0003DMT400053926	Potato	cytosol	16.77	20.91
PGSC0003DMT400016057	Potato	cytosol	23.78	20.91
PGSC0003DMT400059334	Potato	plastid	22.56	20.56
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	11.28	20.56
PGSC0003DMT400016099	Potato	cytosol	22.87	20.38
PGSC0003DMT400016096	Potato	cytosol	11.89	18.84
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	9.76	16.93

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M0ZR11
PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400002433	PGSC:PGSC0003DMG400002433	EnsemblPlants:PGSC0003DMT400006240	PFscan:PS50181
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002954659	SEG:seg

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002433]

Coordinates

chr8:-:18416995..18418139

Molecular Weight (calculated)

37727.0 Da

IEP (calculated)

5.588

GRAVY (calculated)

-0.271

Length

328 amino acids

Sequence
(BLAST)

001: MKSEASHRRP KGWELRKGTE IPSKDSMGSL PEELIIAILV RVPVKYLLQF KCVSKYWFNL ISSPEFVKTH LSFSAKDYTR HISLLQLDTQ YTNIKYCSVS
101: SLFHNSVNEA LDLDCPMNNP PQCLYILGSV NGLVCLSDGF DGLVIWNPSI RKFNKVFDYV PTQIHECWSI YGFGYDEVHH DYKHRHCWGI TSIDLVDEKW
201: GKVELPSDNK EGGLKLGLLG SDLSVLCNND ERTHSDVWVM KEYGVKASWT KLYTITYPEN YNLSPPLFMY NKGEILLAFK STFAIYNPKN DSITYPEVPN
301: VEVTSIYEYM DVELCIERLV CPDLPNED

Best Arabidopsis Sequence Match ( AT3G16210.1 )
(BLAST)

001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI

Arabidopsis Description

Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.