Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035091 | Potato | mitochondrion | 89.95 | 86.73 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 71.69 | 82.62 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 76.98 | 71.85 |
| PGSC0003DMT400076275 | Potato | nucleus | 51.85 | 48.76 |
| PGSC0003DMT400080382 | Potato | golgi | 44.71 | 44.95 |
| PGSC0003DMT400009785 | Potato | cytosol | 44.97 | 44.85 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 38.1 | 43.9 |
| PGSC0003DMT400016504 | Potato | cytosol | 44.71 | 43.78 |
| PGSC0003DMT400080369 | Potato | nucleus | 46.03 | 43.61 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 45.5 | 43.0 |
| PGSC0003DMT400055337 | Potato | plastid | 45.5 | 42.36 |
| PGSC0003DMT400009709 | Potato | cytosol | 41.8 | 41.8 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 33.6 | 39.81 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 37.04 | 39.66 |
| PGSC0003DMT400076282 | Potato | nucleus | 16.4 | 39.24 |
| PGSC0003DMT400031977 | Potato | cytosol | 40.21 | 38.29 |
| PGSC0003DMT400067303 | Potato | extracellular | 37.04 | 38.25 |
| PGSC0003DMT400096151 | Potato | cytosol | 40.21 | 38.19 |
| PGSC0003DMT400085500 | Potato | cytosol | 38.62 | 38.12 |
| PGSC0003DMT400092235 | Potato | cytosol | 33.33 | 38.07 |
| PGSC0003DMT400059327 | Potato | cytosol | 37.04 | 37.94 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 37.3 | 37.9 |
| PGSC0003DMT400095263 | Potato | cytosol | 26.98 | 37.5 |
| PGSC0003DMT400090333 | Potato | cytosol | 30.42 | 37.1 |
| PGSC0003DMT400080292 | Potato | cytosol | 19.31 | 36.87 |
| PGSC0003DMT400076284 | Potato | cytosol | 41.27 | 36.79 |
| PGSC0003DMT400090382 | Potato | cytosol | 36.77 | 36.2 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 35.19 | 35.95 |
| PGSC0003DMT400094202 | Potato | cytosol | 27.25 | 35.89 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 46.03 | 35.37 |
| PGSC0003DMT400096925 | Potato | cytosol | 23.55 | 35.32 |
| PGSC0003DMT400059330 | Potato | extracellular | 35.19 | 35.19 |
| PGSC0003DMT400045556 | Potato | cytosol | 42.06 | 34.42 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 34.13 | 33.68 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 24.34 | 33.33 |
| PGSC0003DMT400097507 | Potato | cytosol | 20.9 | 33.19 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 29.37 | 33.13 |
| KRH20939 | Soybean | cytosol, mitochondrion | 34.92 | 32.51 |
| PGSC0003DMT400059329 | Potato | vacuole | 34.13 | 32.17 |
| PGSC0003DMT400025788 | Potato | cytosol | 33.07 | 31.89 |
| PGSC0003DMT400093810 | Potato | plastid | 23.55 | 31.79 |
| PGSC0003DMT400076274 | Potato | cytosol | 32.54 | 31.78 |
| KRH11341 | Soybean | cytosol, plastid | 32.54 | 31.3 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 29.63 | 31.2 |
| PGSC0003DMT400076216 | Potato | cytosol | 31.75 | 30.85 |
| PGSC0003DMT400034123 | Potato | golgi | 29.89 | 30.79 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 29.89 | 30.54 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 29.89 | 30.54 |
| PGSC0003DMT400088797 | Potato | cytosol | 19.84 | 30.49 |
| PGSC0003DMT400053926 | Potato | cytosol | 20.37 | 29.28 |
| KRH72048 | Soybean | cytosol | 26.45 | 28.33 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 28.84 | 27.74 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 30.42 | 27.51 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 17.46 | 27.16 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 12.7 | 26.67 |
| PGSC0003DMT400012000 | Potato | plastid | 25.93 | 26.49 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 27.51 | 26.2 |
| PGSC0003DMT400059334 | Potato | plastid | 24.34 | 25.56 |
| Bra014991.1-P | Field mustard | cytosol | 24.6 | 25.14 |
| PGSC0003DMT400016096 | Potato | cytosol | 13.76 | 25.12 |
| PGSC0003DMT400080293 | Potato | nucleus | 16.67 | 24.8 |
| PGSC0003DMT400058829 | Potato | cytosol | 23.81 | 24.73 |
| PGSC0003DMT400016099 | Potato | cytosol | 23.81 | 24.46 |
| AT3G23880.1 | Thale cress | cytosol | 23.55 | 24.45 |
| PGSC0003DMT400046369 | Potato | cytosol | 25.93 | 24.26 |
| PGSC0003DMT400030295 | Potato | cytosol | 12.7 | 24.24 |
| PGSC0003DMT400016057 | Potato | cytosol | 23.28 | 23.59 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 11.11 | 22.22 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M1B1X9 | PFAM:PF00646 |
| PFAM:PF07734 | EnsemblPlantsGene:PGSC0003DMG400013520 | PGSC:PGSC0003DMG400013520 | EnsemblPlants:PGSC0003DMT400035180 | PFscan:PS50181 | PANTHER:PTHR44355 |
| PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002949D9F | SEG:seg |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013520]
Coordinates
chr5:-:9273070..9278152
Molecular Weight (calculated)
43505.3 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.311
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSEASHRRP KRRRLRKGTE IPSKDSMGCL PEELIVAILV RVPVKYLLQF KCVSKNWFNL ISSPEFVKTH LNFSANDYTR HISLLQFRED IKYCSVSSLF
101: HSSVNEALDL DCPMKNPPQR VYISGSVNGL VCLADGFSGL VLWNPSIRKF KKVFGFVPTQ MRECWSKCGF GYDEVHNDYK VVGIFSSMIK ANFEAAIYSL
201: KSDSWRTLED FKPGVSYCGE AKFVNHKLHW ITFRRRRMSI TSIDLVDEKW GKLDLPSYNK GRDLKLGVLG SDLSVLCNND ERTHSDVWVM KEYGVKASWT
301: KLYTIRYPEN YELSPPLFTY NKGEILLAFK STLAIYDPKN DSLTYPELPN VEVTGFYNRI EAELCIESLV CPDLPNED
101: HSSVNEALDL DCPMKNPPQR VYISGSVNGL VCLADGFSGL VLWNPSIRKF KKVFGFVPTQ MRECWSKCGF GYDEVHNDYK VVGIFSSMIK ANFEAAIYSL
201: KSDSWRTLED FKPGVSYCGE AKFVNHKLHW ITFRRRRMSI TSIDLVDEKW GKLDLPSYNK GRDLKLGVLG SDLSVLCNND ERTHSDVWVM KEYGVKASWT
301: KLYTIRYPEN YELSPPLFTY NKGEILLAFK STLAIYDPKN DSLTYPELPN VEVTGFYNRI EAELCIESLV CPDLPNED
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.