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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400059337 Potato cytosol, plasma membrane 55.91 38.17
PGSC0003DMT400059330 Potato extracellular 55.91 37.57
Solyc05g007530.1.1 Tomato cytosol 51.57 35.22
PGSC0003DMT400067303 Potato extracellular 48.82 33.88
PGSC0003DMT400080292 Potato cytosol 21.65 27.78
PGSC0003DMT400093810 Potato plastid 29.13 26.43
PGSC0003DMT400088797 Potato cytosol 24.41 25.2
PGSC0003DMT400076282 Potato nucleus 13.78 22.15
PGSC0003DMT400096882 Potato cytosol, plasma membrane, plastid 22.44 20.65
PGSC0003DMT400053926 Potato cytosol 20.08 19.39
PGSC0003DMT400090382 Potato cytosol 29.13 19.27
PGSC0003DMT400059329 Potato vacuole 29.53 18.7
PGSC0003DMT400059327 Potato cytosol 26.77 18.43
PGSC0003DMT400035180 Potato golgi, nucleus, plastid 24.8 16.67
PGSC0003DMT400080382 Potato golgi 24.41 16.49
PGSC0003DMT400009708 Potato cytosol, peroxisome, plastid 21.26 16.46
PGSC0003DMT400006240 Potato mitochondrion 21.26 16.46
PGSC0003DMT400076275 Potato nucleus 25.98 16.42
PGSC0003DMT400094202 Potato cytosol 18.5 16.38
PGSC0003DMT400009785 Potato cytosol 24.41 16.36
PGSC0003DMT400035091 Potato mitochondrion 24.8 16.07
PGSC0003DMT400097507 Potato cytosol 14.96 15.97
PGSC0003DMT400053922 Potato extracellular, golgi 25.98 15.79
PGSC0003DMT400055337 Potato plastid 24.02 15.02
PGSC0003DMT400090333 Potato cytosol 18.11 14.84
PGSC0003DMT400080369 Potato nucleus 23.23 14.79
PGSC0003DMT400016504 Potato cytosol 22.44 14.77
PGSC0003DMT400015598 Potato cytosol, nucleus, peroxisome, plastid 23.23 14.75
PGSC0003DMT400009709 Potato cytosol 21.26 14.29
PGSC0003DMT400092235 Potato cytosol 18.5 14.2
PGSC0003DMT400030295 Potato cytosol 11.02 14.14
PGSC0003DMT400080239 Potato cytosol, plastid 17.72 14.11
PGSC0003DMT400096925 Potato cytosol 13.78 13.89
PGSC0003DMT400094422 Potato extracellular, golgi, plastid 18.9 13.6
PGSC0003DMT400031977 Potato cytosol 20.87 13.35
PGSC0003DMT400076284 Potato cytosol 22.05 13.21
PGSC0003DMT400055826 Potato cytosol, extracellular, plasma membrane 17.32 13.13
PGSC0003DMT400096151 Potato cytosol 20.47 13.07
VIT_18s0041g01100.t01 Wine grape cytosol 12.2 12.76
PGSC0003DMT400058350 Potato cytosol, extracellular, plasma membrane, plastid 18.5 12.7
PGSC0003DMT400085500 Potato cytosol 18.9 12.53
PGSC0003DMT400045556 Potato cytosol 22.44 12.34
KRH35044 Soybean cytosol, extracellular, golgi 17.32 12.26
KRH11341 Soybean cytosol, plastid 18.5 11.96
PGSC0003DMT400076274 Potato cytosol 18.11 11.89
PGSC0003DMT400076216 Potato cytosol 18.11 11.83
PGSC0003DMT400015653 Potato cytosol, plastid 22.44 11.59
PGSC0003DMT400095263 Potato cytosol 12.2 11.4
PGSC0003DMT400008824 Potato extracellular, golgi, plastid 16.54 11.35
PGSC0003DMT400008825 Potato extracellular, golgi, plastid 16.54 11.35
KRH11340 Soybean cytosol, peroxisome, plastid 16.54 10.97
KRH20939 Soybean cytosol, mitochondrion 16.93 10.59
PGSC0003DMT400031274 Potato extracellular, plasma membrane 7.48 10.56
PGSC0003DMT400012000 Potato plastid 15.35 10.54
KRH72048 Soybean cytosol 14.57 10.48
Bra014991.1-P Field mustard cytosol 14.96 10.27
AT3G23880.1 Thale cress cytosol 14.17 9.89
KRH35047 Soybean cytosol, peroxisome, plastid 14.96 9.67
PGSC0003DMT400016096 Potato cytosol 7.87 9.66
PGSC0003DMT400058829 Potato cytosol 13.78 9.62
PGSC0003DMT400034123 Potato golgi 13.78 9.54
PGSC0003DMT400025788 Potato cytosol 14.57 9.44
PGSC0003DMT400016099 Potato cytosol 13.39 9.24
PGSC0003DMT400046369 Potato cytosol 14.57 9.16
PGSC0003DMT400059334 Potato plastid 12.2 8.61
PGSC0003DMT400016057 Potato cytosol 12.6 8.58
VIT_18s0041g01090.t01 Wine grape cytosol 12.6 8.06
PGSC0003DMT400054287 Potato cytosol, extracellular, mitochondrion, plastid 4.33 5.82
Protein Annotations
EnsemblPlants:PGSC0003DMT400080293EnsemblPlantsGene:PGSC0003DMG401031260PANTHER:PTHR44355PANTHER:PTHR44355:SF1PGSC:PGSC0003DMG401031260SEG:seg
UniParc:UPI00029522A6UniProt:M1D3A1MapMan:35.2:::
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG401031260]
Coordinates
chr5:+:4980507..4987435
Molecular Weight (calculated)
29063.4 Da
IEP (calculated)
10.132
GRAVY (calculated)
-0.471
Length
254 amino acids
Sequence
(BLAST)
001: MLQLDKGNQR GRNREKRYRK KKATYRELRA QPQDKAPPSK PLLGSIVPLD YTSTGETVEV RKEIEKGKSK LRKSYLCELR NRANMANKSN VLMIYDKRKR
101: KVEFHIARGG DTERKKKSSN LKTLSSRVLI LKLLYWALSA DVDTFNMCNI ISLDLADETW RRLEIPNSYG KGSYPLALGV VGSHLSVLCL NCLEGTNSDV
201: WIRKDCGVEV SRTKIFTVDH PKDLGEFIFF TSIFSIPCYQ SNMDEILLLL PPLS
Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.