Factsheet for PGSC0003DMT400096151

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090333	Potato	cytosol	65.08	83.55
PGSC0003DMT400097507	Potato	cytosol	46.98	78.57
PGSC0003DMT400094202	Potato	cytosol	56.53	78.4
PGSC0003DMT400085500	Potato	cytosol	64.07	66.58
PGSC0003DMT400080369	Potato	nucleus	50.75	50.63
PGSC0003DMT400076275	Potato	nucleus	51.01	50.5
PGSC0003DMT400055337	Potato	plastid	49.25	48.28
PGSC0003DMT400092235	Potato	cytosol	36.93	44.41
PGSC0003DMT400080382	Potato	golgi	41.71	44.15
PGSC0003DMT400009785	Potato	cytosol	41.71	43.8
PGSC0003DMT400009709	Potato	cytosol	41.46	43.65
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	43.22	43.0
PGSC0003DMT400095263	Potato	cytosol	28.89	42.28
PGSC0003DMT400031977	Potato	cytosol	41.21	41.31
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	33.17	40.24
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	38.19	40.21
PGSC0003DMT400016504	Potato	cytosol	38.94	40.16
PGSC0003DMT400006240	Potato	mitochondrion	32.66	39.63
PGSC0003DMT400035091	Potato	mitochondrion	38.94	39.54
PGSC0003DMT400076282	Potato	nucleus	15.58	39.24
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	34.42	38.81
PGSC0003DMT400076284	Potato	cytosol	40.95	38.44
PGSC0003DMT400080239	Potato	cytosol, plastid	30.65	38.24
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	35.18	37.84
PGSC0003DMT400045556	Potato	cytosol	43.22	37.23
PGSC0003DMT400090382	Potato	cytosol	35.68	36.98
PGSC0003DMT400059327	Potato	cytosol	34.17	36.86
PGSC0003DMT400067303	Potato	extracellular	33.67	36.61
PGSC0003DMT400096925	Potato	cytosol	23.12	36.51
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	33.17	35.48
PGSC0003DMT400076274	Potato	cytosol	32.91	33.85
PGSC0003DMT400080292	Potato	cytosol	16.83	33.84
PGSC0003DMT400015653	Potato	cytosol, plastid	41.71	33.74
KRH11340	Soybean	cytosol, peroxisome, plastid	32.41	33.68
PGSC0003DMT400025788	Potato	cytosol	32.91	33.42
PGSC0003DMT400093810	Potato	plastid	23.37	33.21
PGSC0003DMT400076216	Potato	cytosol	32.41	33.16
PGSC0003DMT400059330	Potato	extracellular	30.9	32.54
KRH11341	Soybean	cytosol, plastid	31.91	32.32
PGSC0003DMT400034123	Potato	golgi	29.4	31.88
KRH20939	Soybean	cytosol, mitochondrion	32.41	31.77
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	21.86	31.52
PGSC0003DMT400059329	Potato	vacuole	31.16	30.92
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	28.14	30.27
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	28.14	30.27
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	25.13	29.85
KRH35044	Soybean	cytosol, extracellular, golgi	26.88	29.8
PGSC0003DMT400088797	Potato	cytosol	18.09	29.27
PGSC0003DMT400053926	Potato	cytosol	19.1	28.9
PGSC0003DMT400053922	Potato	extracellular, golgi	30.15	28.71
AT3G23880.1	Thale cress	cytosol	25.63	28.02
VIT_18s0041g01100.t01	Wine grape	cytosol	17.09	27.98
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	12.56	27.78
PGSC0003DMT400046369	Potato	cytosol	28.14	27.72
Bra014991.1-P	Field mustard	cytosol	25.63	27.57
PGSC0003DMT400059334	Potato	plastid	24.87	27.5
PGSC0003DMT400012000	Potato	plastid	24.87	26.76
PGSC0003DMT400016099	Potato	cytosol	24.62	26.63
PGSC0003DMT400016057	Potato	cytosol	24.62	26.27
PGSC0003DMT400058829	Potato	cytosol	23.87	26.1
PGSC0003DMT400016096	Potato	cytosol	13.57	26.09
VIT_18s0041g01090.t01	Wine grape	cytosol	25.88	25.94
KRH72048	Soybean	cytosol	22.36	25.21
KRH35047	Soybean	cytosol, peroxisome, plastid	24.87	25.19
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.56	24.34
PGSC0003DMT400030295	Potato	cytosol	10.8	21.72
PGSC0003DMT400080293	Potato	nucleus	13.07	20.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400096151	EnsemblPlantsGene:PGSC0003DMG400045722	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFscan:PS50181	PGSC:PGSC0003DMG400045722	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000295B456	UniProt:M1DXT7	MapMan:19.2.2.8.1.4.6	:

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045722]

Coordinates

chr12:+:20809067..20810263

Molecular Weight (calculated)

45403.8 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.143

Length

398 amino acids

Sequence
(BLAST)

001: MEFEASHRHQ KRIKHVSAPF SASSIHDLTF TSVVLPIELI TEILLRLPVK PLLRFRSVSK SWLGLISSRK FVNTHLNISA NNKAFHRLIL GFDPPENNLK
101: DCSLDSLLYD HVTRAIDLDY PPKKSYESIK VVGSINGVIC VAIEQKDLFL WNPSIRKLKK MPSSRTGSFY MYGFGYDELH DDYKVVDITL NVGDDNSCYN
201: VGKIYSLNNK SWKHLDDLHI GMPFNNSGML VNGKLHWAIT NKFSGYYNDC VILVVDLADG RWEEMENPCY GEGNFDFTPY LGVLGNDLCM ICHPLMIRAD
301: VWVMKKYGVK VSWTKMFNIK YVGYNLFGPH FSLSSEGEIL FKIGSIFVIY NPNDDSMRFP KVSNCGHLVD AKLYIESLVW PFVAEHTRNA TTPKATKS

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.