Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- mitochondrion 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059329 | Potato | vacuole | 53.83 | 56.11 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 22.73 | 52.78 |
| PGSC0003DMT400093810 | Potato | plastid | 35.17 | 52.5 |
| PGSC0003DMT400080292 | Potato | cytosol | 24.4 | 51.52 |
| PGSC0003DMT400090382 | Potato | cytosol | 44.26 | 48.18 |
| PGSC0003DMT400088797 | Potato | cytosol | 28.23 | 47.97 |
| PGSC0003DMT400059327 | Potato | cytosol | 42.11 | 47.7 |
| PGSC0003DMT400053926 | Potato | cytosol | 28.95 | 46.01 |
| PGSC0003DMT400059334 | Potato | plastid | 39.47 | 45.83 |
| PGSC0003DMT400067303 | Potato | extracellular | 39.0 | 44.54 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 38.04 | 42.74 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 25.36 | 38.41 |
| PGSC0003DMT400059330 | Potato | extracellular | 33.97 | 37.57 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 28.47 | 33.71 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 25.36 | 33.23 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 25.84 | 32.93 |
| PGSC0003DMT400080382 | Potato | golgi | 29.19 | 32.45 |
| PGSC0003DMT400095263 | Potato | cytosol | 20.57 | 31.62 |
| PGSC0003DMT400076275 | Potato | nucleus | 29.9 | 31.09 |
| PGSC0003DMT400009785 | Potato | cytosol | 27.75 | 30.61 |
| PGSC0003DMT400096925 | Potato | cytosol | 18.42 | 30.56 |
| PGSC0003DMT400009709 | Potato | cytosol | 27.51 | 30.42 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 27.51 | 30.42 |
| PGSC0003DMT400016504 | Potato | cytosol | 27.99 | 30.31 |
| PGSC0003DMT400092235 | Potato | cytosol | 23.92 | 30.21 |
| PGSC0003DMT400096151 | Potato | cytosol | 28.71 | 30.15 |
| PGSC0003DMT400055337 | Potato | plastid | 29.19 | 30.05 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 23.21 | 29.57 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 27.99 | 29.25 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 27.03 | 28.83 |
| PGSC0003DMT400080369 | Potato | nucleus | 27.51 | 28.82 |
| PGSC0003DMT400031977 | Potato | cytosol | 27.27 | 28.72 |
| PGSC0003DMT400085500 | Potato | cytosol | 25.84 | 28.2 |
| PGSC0003DMT400076284 | Potato | cytosol | 27.99 | 27.59 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 24.4 | 27.57 |
| PGSC0003DMT400090333 | Potato | cytosol | 19.86 | 26.77 |
| PGSC0003DMT400076282 | Potato | nucleus | 10.05 | 26.58 |
| PGSC0003DMT400094202 | Potato | cytosol | 18.18 | 26.48 |
| PGSC0003DMT400034123 | Potato | golgi | 23.21 | 26.43 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 21.05 | 26.27 |
| PGSC0003DMT400045556 | Potato | cytosol | 28.95 | 26.19 |
| PGSC0003DMT400097507 | Potato | cytosol | 14.83 | 26.05 |
| PGSC0003DMT400080293 | Potato | nucleus | 15.79 | 25.98 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 23.68 | 25.85 |
| PGSC0003DMT400076216 | Potato | cytosol | 23.92 | 25.71 |
| KRH20939 | Soybean | cytosol, mitochondrion | 24.16 | 24.88 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 21.05 | 24.51 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 27.99 | 23.78 |
| PGSC0003DMT400076274 | Potato | cytosol | 22.01 | 23.77 |
| Bra014991.1-P | Field mustard | cytosol | 20.81 | 23.51 |
| AT3G23880.1 | Thale cress | cytosol | 20.1 | 23.08 |
| KRH11341 | Soybean | cytosol, plastid | 21.53 | 22.9 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 20.1 | 22.7 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 20.1 | 22.7 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 21.53 | 22.67 |
| KRH72048 | Soybean | cytosol | 18.66 | 22.1 |
| PGSC0003DMT400025788 | Potato | cytosol | 20.57 | 21.94 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 12.68 | 21.81 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 20.1 | 21.37 |
| PGSC0003DMT400030295 | Potato | cytosol | 10.05 | 21.21 |
| PGSC0003DMT400012000 | Potato | plastid | 17.94 | 20.27 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 9.09 | 20.11 |
| PGSC0003DMT400058829 | Potato | cytosol | 17.46 | 20.05 |
| PGSC0003DMT400016057 | Potato | cytosol | 17.7 | 19.84 |
| PGSC0003DMT400046369 | Potato | cytosol | 19.14 | 19.8 |
| PGSC0003DMT400016096 | Potato | cytosol | 9.33 | 18.84 |
| PGSC0003DMT400016099 | Potato | cytosol | 16.27 | 18.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400053922 | EnsemblPlantsGene:PGSC0003DMG400020921 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_interact_dom |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | PFscan:PS50181 |
| PGSC:PGSC0003DMG400020921 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002952B90 |
| UniProt:M1BVM6 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020921]
Coordinates
chr10:+:40868395..40869651
Molecular Weight (calculated)
48283.6 Da
IEP (calculated)
6.338
GRAVY (calculated)
-0.111
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFLSFRDW IYQTILFKFL LLWYHFIFTT PISTTTEIII PNEILTEILL RLPAESLMRF TSVLKSWNQQ ISSPHFVNTH LKIAANDKKF RNHGIIFENL
101: QFCRLPPLFN KRQVTDEELI HMDPPNLSAF FVGSVNGLIC LCNHELETYI WNPTISKSKK IHDSPLRSSS NTKFGFGYDE SHDDYKALFI NYSSLCYYDS
201: MCNVSNPKIV VYIYSLRTDS WTTVHGQLQG NFLTNTLGKY INGKINWISC NRLGIGKIIS FNTADETWGT LELPTFRQDN CNYQLGVVGN DLSLINTSNF
301: MDTSSDVWIF KNCEFWTKLF TIEYHPNLSH FMWAPHLSDA FSIQFHESNN GDFLLLLPPL IMIFDGSTRR LKHNVYVEGS VDDGGCDAIE IYVESIVNPL
401: TIFDQGRRIQ NHLAENSA
101: QFCRLPPLFN KRQVTDEELI HMDPPNLSAF FVGSVNGLIC LCNHELETYI WNPTISKSKK IHDSPLRSSS NTKFGFGYDE SHDDYKALFI NYSSLCYYDS
201: MCNVSNPKIV VYIYSLRTDS WTTVHGQLQG NFLTNTLGKY INGKINWISC NRLGIGKIIS FNTADETWGT LELPTFRQDN CNYQLGVVGN DLSLINTSNF
301: MDTSSDVWIF KNCEFWTKLF TIEYHPNLSH FMWAPHLSDA FSIQFHESNN GDFLLLLPPL IMIFDGSTRR LKHNVYVEGS VDDGGCDAIE IYVESIVNPL
401: TIFDQGRRIQ NHLAENSA
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.