Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400095263 | Potato | cytosol | 35.71 | 33.09 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 36.9 | 28.35 |
| PGSC0003DMT400080382 | Potato | golgi | 38.89 | 26.06 |
| PGSC0003DMT400009709 | Potato | cytosol | 38.89 | 25.93 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 32.14 | 25.39 |
| PGSC0003DMT400076275 | Potato | nucleus | 39.68 | 24.88 |
| PGSC0003DMT400009785 | Potato | cytosol | 37.3 | 24.8 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 38.89 | 24.5 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 35.71 | 24.19 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 33.33 | 23.8 |
| PGSC0003DMT400055337 | Potato | plastid | 38.1 | 23.65 |
| PGSC0003DMT400080369 | Potato | nucleus | 37.3 | 23.56 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 35.32 | 23.55 |
| PGSC0003DMT400059327 | Potato | cytosol | 34.13 | 23.31 |
| PGSC0003DMT400067303 | Potato | extracellular | 33.73 | 23.22 |
| PGSC0003DMT400096151 | Potato | cytosol | 36.51 | 23.12 |
| PGSC0003DMT400059330 | Potato | extracellular | 34.13 | 22.75 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 17.06 | 22.75 |
| PGSC0003DMT400076284 | Potato | cytosol | 37.7 | 22.41 |
| PGSC0003DMT400090382 | Potato | cytosol | 34.13 | 22.4 |
| PGSC0003DMT400092235 | Potato | cytosol | 29.37 | 22.36 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 34.52 | 22.19 |
| PGSC0003DMT400031977 | Potato | cytosol | 34.92 | 22.17 |
| PGSC0003DMT400016504 | Potato | cytosol | 33.73 | 22.02 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 28.57 | 21.95 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 33.33 | 21.93 |
| PGSC0003DMT400085500 | Potato | cytosol | 33.33 | 21.93 |
| PGSC0003DMT400076274 | Potato | cytosol | 33.33 | 21.71 |
| PGSC0003DMT400034123 | Potato | golgi | 31.35 | 21.53 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 31.35 | 21.35 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.73 | 20.94 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 22.62 | 20.65 |
| PGSC0003DMT400045556 | Potato | cytosol | 37.3 | 20.35 |
| PGSC0003DMT400080292 | Potato | cytosol | 15.87 | 20.2 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 28.57 | 20.06 |
| PGSC0003DMT400076216 | Potato | cytosol | 30.95 | 20.05 |
| Bra014991.1-P | Field mustard | cytosol | 29.37 | 20.0 |
| PGSC0003DMT400025788 | Potato | cytosol | 30.95 | 19.9 |
| KRH11341 | Soybean | cytosol, plastid | 30.95 | 19.85 |
| KRH72048 | Soybean | cytosol | 27.78 | 19.83 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 26.19 | 19.7 |
| PGSC0003DMT400090333 | Potato | cytosol | 24.21 | 19.68 |
| PGSC0003DMT400059329 | Potato | vacuole | 30.95 | 19.45 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 28.17 | 19.19 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 28.17 | 19.19 |
| PGSC0003DMT400053926 | Potato | cytosol | 19.84 | 19.01 |
| AT3G23880.1 | Thale cress | cytosol | 27.38 | 18.96 |
| PGSC0003DMT400093810 | Potato | plastid | 20.63 | 18.57 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 36.11 | 18.5 |
| PGSC0003DMT400094202 | Potato | cytosol | 21.03 | 18.47 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 30.56 | 18.42 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 28.17 | 17.88 |
| PGSC0003DMT400058829 | Potato | cytosol | 25.4 | 17.58 |
| PGSC0003DMT400059334 | Potato | plastid | 25.0 | 17.5 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.98 | 17.3 |
| PGSC0003DMT400012000 | Potato | plastid | 25.0 | 17.03 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 11.9 | 16.67 |
| PGSC0003DMT400046369 | Potato | cytosol | 26.59 | 16.58 |
| PGSC0003DMT400016099 | Potato | cytosol | 24.21 | 16.58 |
| PGSC0003DMT400088797 | Potato | cytosol | 15.87 | 16.26 |
| PGSC0003DMT400016057 | Potato | cytosol | 23.41 | 15.82 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 15.08 | 15.64 |
| PGSC0003DMT400016096 | Potato | cytosol | 12.7 | 15.46 |
| PGSC0003DMT400097507 | Potato | cytosol | 13.89 | 14.71 |
| PGSC0003DMT400080293 | Potato | nucleus | 13.89 | 13.78 |
| PGSC0003DMT400076282 | Potato | nucleus | 7.94 | 12.66 |
| PGSC0003DMT400030295 | Potato | cytosol | 6.35 | 8.08 |
| CDY27453 | Canola | cytosol, mitochondrion | 0.4 | 1.04 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400096925 | EnsemblPlantsGene:PGSC0003DMG400046496 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| PFAM:PF00646 | PFscan:PS50181 | PGSC:PGSC0003DMG400046496 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI00029582CF | UniProt:M1DZI9 | MapMan:35.2 | : | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046496]
Coordinates
chr12:-:59055640..59056398
Molecular Weight (calculated)
29588.7 Da
IEP (calculated)
7.930
GRAVY (calculated)
-0.141
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: PSHLPNEIIM TILSKIPVKS LLQYKFVSKS WLRLISNSEF VKKYPNSSAN DKLYNNHKVI LRWVYNKICA YSLPSLLYDP ITQLTEIDYP MNDLDIKWSD
101: LINILIFLDR ISEKEVSLCL WNPSIRKGKI LSGVKLIWGC HTLFRYGFQY DEIYKIVVIV NFDKDTKVDI YSLKVDYFWR TVGDFPRGTR INSSAKCVRG
201: KLNWTTLIVD GYDVSHNIVS FDLARETWGE VENPDYGEGK FDLSWEFWEM IL
101: LINILIFLDR ISEKEVSLCL WNPSIRKGKI LSGVKLIWGC HTLFRYGFQY DEIYKIVVIV NFDKDTKVDI YSLKVDYFWR TVGDFPRGTR INSSAKCVRG
201: KLNWTTLIVD GYDVSHNIVS FDLARETWGE VENPDYGEGK FDLSWEFWEM IL
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.