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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 3
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76370 Canola cytosol 97.92 23.1
CDX78638 Canola cytosol 56.25 13.81
CDY67179 Canola cytosol 61.46 13.79
CDX78642 Canola cytosol 56.25 13.53
CDX78640 Canola cytosol 51.04 12.63
CDX70626 Canola cytosol 54.17 12.04
CDX78641 Canola cytosol 48.96 11.75
CDX78639 Canola cytosol 45.83 11.28
CDX78643 Canola cytosol 47.92 10.6
VIT_18s0041g01100.t01 Wine grape cytosol 11.46 4.53
CDY08063 Canola cytosol 16.67 3.98
CDY58343 Canola cytosol 15.62 3.71
CDX97333 Canola cytosol 10.42 2.99
CDX77477 Canola cytosol 10.42 2.7
VIT_18s0041g01090.t01 Wine grape cytosol 9.38 2.27
CDX78644 Canola plasma membrane 7.29 1.62
CDX85142 Canola cytosol 9.38 1.1
PGSC0003DMT400096925 Potato cytosol 1.04 0.4
Protein Annotations
EnsemblPlants:CDY27453EnsemblPlantsGene:GSBRNA2T00037456001ProteinID:CDY27453ProteinID:CDY27453.1SEG:segUniParc:UPI0004EEE42B
UniProt:A0A078GS69MapMan:35.1::::
Description
BnaC03g64930DBnaC03g64930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS69]
Coordinates
chrLK032204:-:520174..521372
Molecular Weight (calculated)
11274.9 Da
IEP (calculated)
10.879
GRAVY (calculated)
-0.633
Length
96 amino acids
Sequence
(BLAST)
1: MRPLLYSKDR RKVLIEVNNA KLLWFDLGSK RLRTLRIKDC DSSYSAELLV SSLVLGCKGD PSEAKRRRER RALEDKMMQQ RSKRDDFLSK GFKLVL
Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.