CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58343	Canola	cytosol	92.29	91.83
AT3G06240.1	Thale cress	cytosol	69.4	65.34
PGSC0003DMT400058829	Potato	cytosol	27.36	30.22
PGSC0003DMT400012000	Potato	plastid	26.62	28.92
PGSC0003DMT400016057	Potato	cytosol	26.37	28.42
Solyc12g099550.1.1	Tomato	cytosol	23.63	28.19
PGSC0003DMT400016096	Potato	cytosol	14.18	27.54
PGSC0003DMT400016099	Potato	cytosol	25.12	27.45
CDX76370	Canola	cytosol	24.38	24.08
CDX78638	Canola	cytosol	22.64	23.27
CDX78639	Canola	cytosol	22.14	22.82
CDY67179	Canola	cytosol	24.13	22.66
CDX78640	Canola	cytosol	21.64	22.42
CDX77477	Canola	cytosol	20.4	22.16
CDX97333	Canola	cytosol	18.41	22.09
CDX78641	Canola	cytosol	21.89	22.0
CDX78642	Canola	cytosol	21.14	21.3
CDX70626	Canola	cytosol	21.89	20.37
CDX78643	Canola	cytosol	21.64	20.05
CDY27453	Canola	cytosol, mitochondrion	3.98	16.67
CDX85142	Canola	cytosol	20.65	10.11
CDX78644	Canola	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	UniProt:A0A078F8J5	EnsemblPlants:CDY08063	ProteinID:CDY08063	ProteinID:CDY08063.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00125320001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734
PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EF1385	SEG:seg	:	:	:

Description

BnaC03g34600DBnaC03g34600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8J5]

Coordinates

chrLK031982:-:955494..956702

Molecular Weight (calculated)

46122.3 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.284

Length

402 amino acids

Sequence
(BLAST)

001: MYKKLIHFIS DALTETTKKN ERRRREETTE KASLDLPPEI IREILIRLPA KSIGRFRCVS KLFRSLSSDP KFVKIHIDLT LRNDAVHRKL IVSSHNLYAL
101: DLDAIGKRIR DLLAQELNYP LKEDPIKFDE MIKCHVGENM LKPYRRNWVE IIGSSHGLVC ISPCEGALFL YNPTTGESKR LITPGREEFQ TLGFGFDDLT
201: DDYKVVKLVA DGDNVLKSSV YSLKSDSWRW IRDLSYEHKD CFSSGVTLRG VVHWVFSNEN QRAVLAFDFK TEEFREMLLP GEAEDCGHIY RNFVVGVTNG
301: RLCLVNSCYE VHDDVWVMNE YGVASSWTRI KISLLYRSMK PLCSSKNGEE VLLELDGDMV LYNFESHASR YLGIRGVKLS DGFEADAYVE SLISPNSYGF
401: VN

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.