CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006310.1-P	Field mustard	cytosol	91.54	96.75
CDX78642	Canola	cytosol	84.62	82.71
CDX70626	Canola	cytosol	83.59	75.46
CDX78640	Canola	cytosol	74.1	74.48
CDX78641	Canola	cytosol	74.1	72.25
CDX78638	Canola	cytosol	71.28	71.1
CDX78643	Canola	cytosol	77.18	69.35
AT4G22390.1	Thale cress	cytosol	62.31	60.45
CDX76370	Canola	cytosol	62.31	59.71
CDX97333	Canola	cytosol	45.38	52.84
CDY67179	Canola	cytosol	57.69	52.57
CDY27453	Canola	cytosol, mitochondrion	11.28	45.83
KRH36548	Soybean	cytosol, plastid	30.26	30.1
KRH11533	Soybean	cytosol	29.49	29.19
Solyc01g008660.2.1	Tomato	cytosol	24.62	27.91
KRH51164	Soybean	cytosol	26.15	26.49
KRH01989	Soybean	cytosol	26.41	26.28
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.03	22.75
CDY58343	Canola	cytosol	23.08	22.28
CDY08063	Canola	cytosol	22.82	22.14
CDX77477	Canola	cytosol	18.97	20.0
CDX85142	Canola	cytosol	19.23	9.14
CDX78644	Canola	plasma membrane	0.51	0.46

Protein Annotations

EnsemblPlants:CDX78639	EnsemblPlantsGene:GSBRNA2T00130057001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646	ProteinID:CDX78639
ProteinID:CDX78639.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE53BA	MapMan:35.1

Description

BnaA03g05510D

Coordinates

chrLK031815:+:1619834..1621592

Molecular Weight (calculated)

44225.3 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.112

Length

390 amino acids

Sequence
(BLAST)

001: MANMNMPMDV VNDIFLRLPA TTLLRCRVLS KPCCSLIDSP DFIASHLKRT LETAEHLMIL LQSPQLLRTV YLDAPNKLSD VEHPLQTGGV TEVFDSVNGI
101: IGLTNSPLNL ALFNPSTRKI HRLPIASIDF PEHSISRENV FYGLGYDSVS DDYKVVRIIQ SKDEGDEGDE SFGYALEIKV FSLKSNQWKR IRLNFEVQIL
201: FIYFYYDLLH RRGNGVLASN SLHWILPRTG GHTAFNTIIR FDLASDNLGV LNFPQDLYCE DDMDIGVLDG CLCLMCYSES SHVDFWILRE YQGKWSKFIT
301: VPKPETVVSF KFVRPMIYSK DRNKILLELN NGKLVWFDLE SKSFEALEIK GCEGPCNAEI VVSSLVLGCK GDPCRAPEKK MMQESDNRGG

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.