Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78642 | Canola | cytosol | 66.42 | 66.92 |
| Bra006310.1-P | Field mustard | cytosol | 59.7 | 65.04 |
| CDX78640 | Canola | cytosol | 62.44 | 64.69 |
| Bra006311.1-P | Field mustard | cytosol | 62.44 | 64.03 |
| CDX78639 | Canola | cytosol | 60.45 | 62.31 |
| CDX70626 | Canola | cytosol | 66.92 | 62.27 |
| CDX78638 | Canola | cytosol | 60.45 | 62.15 |
| CDX78641 | Canola | cytosol | 60.95 | 61.25 |
| Bra006312.1-P | Field mustard | cytosol | 60.45 | 60.75 |
| Bra006309.1-P | Field mustard | cytosol | 57.96 | 58.84 |
| CDX78643 | Canola | cytosol | 63.43 | 58.76 |
| AT4G12560.2 | Thale cress | cytosol | 57.96 | 56.42 |
| KRH36548 | Soybean | cytosol, plastid | 29.85 | 30.61 |
| Bra006313.1-P | Field mustard | plasma membrane | 63.93 | 30.27 |
| KRH11533 | Soybean | cytosol | 29.1 | 29.7 |
| KRH51164 | Soybean | cytosol | 27.11 | 28.31 |
| KRH01989 | Soybean | cytosol | 27.11 | 27.81 |
| Solyc01g008660.2.1 | Tomato | cytosol | 23.13 | 27.03 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 10.2 | 21.69 |
| AT3G23880.1 | Thale cress | cytosol | 18.41 | 20.33 |
| AT3G06240.1 | Thale cress | cytosol | 21.39 | 20.14 |
| CDX78644 | Canola | plasma membrane | 1.99 | 1.85 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828334 | ProteinID:AEE84603.1 | ArrayExpress:AT4G22390 | EnsemblPlantsGene:AT4G22390 | RefSeq:AT4G22390 |
| TAIR:AT4G22390 | RefSeq:AT4G22390-TAIR-G | EnsemblPlants:AT4G22390.1 | TAIR:AT4G22390.1 | ProteinID:CAB52813.1 | ProteinID:CAB79194.1 |
| InterPro:F-box-assoc_interact_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | RefSeq:NP_193970.2 | PO:PO:0000293 | PANTHER:PTHR44355 | UniProt:Q9SUY0 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00017393C4 | : | : | : | : |
Description
F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
Coordinates
chr4:-:11813425..11815133
Molecular Weight (calculated)
46191.2 Da
IEP (calculated)
7.599
GRAVY (calculated)
-0.112
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRW DGFLSKGFKL
401: KL
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRW DGFLSKGFKL
401: KL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.