Factsheet for Bra006310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78639	Canola	cytosol	96.75	91.54
Bra006311.1-P	Field mustard	cytosol	76.42	71.94
Bra006312.1-P	Field mustard	cytosol	74.8	69.0
Bra006309.1-P	Field mustard	cytosol	72.09	67.17
AT4G22390.1	Thale cress	cytosol	65.04	59.7
Bra020847.1-P	Field mustard	cytosol	63.69	58.17
Bra018485.1-P	Field mustard	cytosol	60.16	54.01
Bra006313.1-P	Field mustard	plasma membrane	79.4	34.51
KRH36548	Soybean	cytosol, plastid	31.17	29.34
Solyc01g008660.2.1	Tomato	cytosol	26.56	28.49
KRH11533	Soybean	cytosol	30.35	28.43
KRH51164	Soybean	cytosol	27.91	26.75
KRH01989	Soybean	cytosol	28.18	26.53
Bra001187.1-P	Field mustard	cytosol	17.89	24.91
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.92	23.28
Bra014991.1-P	Field mustard	cytosol	20.05	20.0

Protein Annotations

EnsemblPlants:Bra006310.1	EnsemblPlants:Bra006310.1-P	EnsemblPlantsGene:Bra006310	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253FC23	UniProt:M4CQ21	MapMan:35.1

Description

AT4G22390 (E=1e-138) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:2949900..2951009

Molecular Weight (calculated)

41813.4 Da

IEP (calculated)

5.006

GRAVY (calculated)

0.011

Length

369 amino acids

Sequence
(BLAST)

001: MANMNMPMDV VNDLFLRLPA TTLLRCRVLS KPCCSLIDSP DFIASHLKRT LETAEHLMIL LQSPQLLRTV YLDAPNKLSD VEHPLQTGGV TEVFGSVNGV
101: IGLTNSPLDL ALFNPSTRKI HRLPIASIDF PEHSISRENV FYGLGYDSVS DDYKVVRIIQ CNDEGDEGDE SFGYALEIKV FSLKSNQWKR IRVNFEVQIL
201: FIYFYYDLLH RRGNGVLASN SLHWILPRTG GHTAFNTIIR FDLASDNLGV LNFPQDLYCE DDMDIGVLDG CLCLMCYSES SHVDVWILRE YQGKWSKFIT
301: VPKPETVVSF EFVRPMIYSK DRSKILLELN NGKLVWFDLE SKSFEALEIK GCEGPCNAEI VVSSLVFGM

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.