Factsheet for Bra001187.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58343	Canola	cytosol	98.87	64.85
AT3G06240.1	Thale cress	cytosol	70.94	44.03
PGSC0003DMT400016096	Potato	cytosol	20.38	26.09
PGSC0003DMT400012000	Potato	plastid	30.57	21.89
Solyc12g099550.1.1	Tomato	cytosol	26.79	21.07
PGSC0003DMT400058829	Potato	cytosol	28.68	20.88
PGSC0003DMT400016057	Potato	cytosol	26.79	19.03
PGSC0003DMT400016099	Potato	cytosol	25.66	18.48
Bra006310.1-P	Field mustard	cytosol	24.91	17.89
Bra020847.1-P	Field mustard	cytosol	27.17	17.82
Bra018485.1-P	Field mustard	cytosol	26.79	17.27
Bra006309.1-P	Field mustard	cytosol	24.91	16.67
Bra006311.1-P	Field mustard	cytosol	24.15	16.33
Bra006312.1-P	Field mustard	cytosol	24.15	16.0
Bra014991.1-P	Field mustard	cytosol	21.89	15.68
Bra006313.1-P	Field mustard	plasma membrane	23.4	7.3

Protein Annotations

EnsemblPlants:Bra001187.1	EnsemblPlants:Bra001187.1-P	EnsemblPlantsGene:Bra001187	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:Gal_Oxase/kelch_b-propeller
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF07734	SUPFAM:SSF50965	TIGRFAMs:TIGR01640	UniParc:UPI0002540AAC
UniProt:M4CAF8	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

AT3G06240 (E=3e-104) | F-box family protein

Coordinates

chrA03:+:15202032..15202829

Molecular Weight (calculated)

29991.4 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.169

Length

265 amino acids

Sequence
(BLAST)

001: MLKPYRRNWV EIIGSSHGLV CISPCEGALF LYNPTTGESK RLLISAGGEE FQTIGFGFDD LTDDYKVVKL VADGDNVLKS SVYSLKSDSW RWIRDLSYEH
101: KDCFSSGVTL RGAVHWVFAN DSQRVVLAFD FKTEEFREML LPGEEAEDCG HSYRNFVVGV INGRLCLVNS CYEVHDDVWV MDEYGVASSW RRIRISLLYR
201: SMKPLCSSEN GEEVLLELDG DMVLYNFESH GSRYLGIRGV KLSDGFEADA YVESLISPNS YGFVN

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.