Factsheet for Bra018485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97333	Canola	cytosol	70.32	86.27
AT4G12560.2	Thale cress	cytosol	84.67	84.26
Bra020847.1-P	Field mustard	cytosol	71.29	72.52
Bra006310.1-P	Field mustard	cytosol	54.01	60.16
Bra006309.1-P	Field mustard	cytosol	56.93	59.09
Bra006311.1-P	Field mustard	cytosol	55.96	58.67
Bra006312.1-P	Field mustard	cytosol	55.47	57.0
KRH36548	Soybean	cytosol, plastid	32.6	34.18
Solyc01g008660.2.1	Tomato	cytosol	28.22	33.72
KRH11533	Soybean	cytosol	31.39	32.74
KRH51164	Soybean	cytosol	29.68	31.69
KRH01989	Soybean	cytosol	28.71	30.1
Bra006313.1-P	Field mustard	plasma membrane	55.96	27.09
Bra001187.1-P	Field mustard	cytosol	17.27	26.79
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.92	25.93
Bra014991.1-P	Field mustard	cytosol	19.46	21.62

Protein Annotations

MapMan:19.2.2.8.1.4.6	EnsemblPlantsGene:Bra018485	EnsemblPlants:Bra018485.1	EnsemblPlants:Bra018485.1-P	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0019538	GO:GO:0031348	GO:GO:0042177	InterPro:IPR001810
UniProt:M4DPP4	PFAM:PF07734	PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002548033	SEG:seg	:	:

Description

AT4G12560 (E=3e-192) | F-box family protein

Coordinates

chrA05:+:8537871..8539106

Molecular Weight (calculated)

47570.9 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.161

Length

411 amino acids

Sequence
(BLAST)

001: MTTIPMDIVN DLFLRLPAKS LVRFRALSKP CYHLINSPDF ISSHLTRVLQ TNDHLMILLR GALHLYTVDL DSPDTLSDVE HPMKRGGPTE VFGSCNGLIG
101: LSNSPTDLAL FNPSTRQIHR LPPSPVDLPE GSSTRGYVFY GLGYDSVNDD YKVVRMVQFK RDPDDELGSS FPYEVKVFSF KMNSWKRIES VLPPIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNIIVRFDL ALEVFDFVRF PEPVANGDVD IQMDIGVLDG CLCLMCNYDH KYVDVWMMKE YNVRGSWCKV
301: FTVHKPKSVK MFSFMRPLVY SKDRDKVLLE INNTKLVWFD LETRKLSTLR IKDCPSSYSA ELVVSSLVLG CKGDLDNIKH RKEQRDKEAR ESKMLQNSKK
401: RWEVLFFFFK I

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.