CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67179	Canola	cytosol	91.64	71.73
Bra018485.1-P	Field mustard	cytosol	86.27	70.32
AT4G12560.2	Thale cress	cytosol	76.42	61.99
CDX76370	Canola	cytosol	65.97	54.3
CDX78640	Canola	cytosol	54.93	47.42
CDX78638	Canola	cytosol	55.22	47.31
CDX78642	Canola	cytosol	54.93	46.12
CDX78639	Canola	cytosol	52.84	45.38
CDX78641	Canola	cytosol	52.84	44.25
CDX70626	Canola	cytosol	55.22	42.82
CDX78643	Canola	cytosol	53.13	41.01
Solyc01g008660.2.1	Tomato	cytosol	28.66	27.91
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	14.63	25.93
KRH36548	Soybean	cytosol, plastid	29.55	25.26
KRH51164	Soybean	cytosol	27.16	23.64
KRH11533	Soybean	cytosol	27.76	23.6
KRH01989	Soybean	cytosol	26.87	22.96
CDY58343	Canola	cytosol	22.69	18.81
CDY08063	Canola	cytosol	22.09	18.41
CDX77477	Canola	cytosol	19.1	17.3
CDY27453	Canola	cytosol, mitochondrion	2.99	10.42
CDX85142	Canola	cytosol	20.3	8.28
CDX78644	Canola	plasma membrane	1.19	0.92

Protein Annotations

EnsemblPlants:CDX97333	EnsemblPlantsGene:GSBRNA2T00104407001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFscan:PS50181
ProteinID:CDX97333	ProteinID:CDX97333.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF32C7	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

BnaA02g21240D

Coordinates

chrLK031898:-:1063018..1064901

Molecular Weight (calculated)

38474.5 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.285

Length

335 amino acids

Sequence
(BLAST)

001: MTTIPMDIVN DLFLRLPAKS LVRFRALSKP CYHLINSPDF ISSHLSRVLQ TNDHLMILLR GALHLYTVDL DSPDTLSDVE HPMKRGGPTE VFGSCNGLIG
101: LSNSPTDLAL FNPSTRQIHR LPPSPVDLPE GSSTRGYVFY GLGYDSVNDD YKVVRMVQFK RDPDDELGSS FPYEVKVFSF KMNSWKRIES VLPPIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNIIVRFDL ALEVFDFVRF PEPVANGDVD IQMDIGVLDG CLCLMCNYDH NIITGKNNEI KKLENLKCCR
301: TVKRGMISCQ RDSNWSYKQK QENRQRRAGR NRKEE

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.