CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014991.1-P	Field mustard	cytosol	97.3	97.3
AT3G23880.1	Thale cress	cytosol	80.81	82.14
CDX85142	Canola	cytosol	94.32	42.51
KRH11340	Soybean	cytosol, peroxisome, plastid	30.27	29.24
KRH20939	Soybean	cytosol, mitochondrion	30.54	27.83
KRH11341	Soybean	cytosol, plastid	27.03	25.45
KRH35044	Soybean	cytosol, extracellular, golgi	23.78	24.51
VIT_18s0041g01100.t01	Wine grape	cytosol	15.95	24.28
VIT_18s0041g01090.t01	Wine grape	cytosol	24.86	23.17
KRH35047	Soybean	cytosol, peroxisome, plastid	24.32	22.9
KRH72048	Soybean	cytosol	20.81	21.81
CDY58343	Canola	cytosol	22.7	20.79
CDY08063	Canola	cytosol	22.16	20.4
CDX78638	Canola	cytosol	21.08	19.95
CDX76370	Canola	cytosol	21.62	19.66
CDX78640	Canola	cytosol	20.27	19.33
CDX97333	Canola	cytosol	17.3	19.1
CDX78639	Canola	cytosol	20.0	18.97
CDY67179	Canola	cytosol	21.89	18.93
CDX78642	Canola	cytosol	19.46	18.05
CDX78641	Canola	cytosol	19.19	17.75
CDX78643	Canola	cytosol	20.0	17.05
CDX70626	Canola	cytosol	19.46	16.67
CDY27453	Canola	cytosol, mitochondrion	2.7	10.42
CDX78644	Canola	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EnsemblPlants:CDX77477	ProteinID:CDX77477	ProteinID:CDX77477.1	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00128344001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDE53B	SEG:seg

Description

BnaA07g06150D

Coordinates

chrLK031811:+:1002238..1003350

Molecular Weight (calculated)

42169.9 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.178

Length

370 amino acids

Sequence
(BLAST)

001: MEEPIIESFF FPPTNLPPEM MEEILLRLPV KSLKRFKCVC TSWRSLISDT LFTLKHALML EASKATTYKK SPYGVITTSR YHLKSCCVHS LYNEPMANVF
101: EHDGELLGRD YYQVVGTCNG LVCFHVDYNK SFYLWNPTIK VQQRLRGSDL ETGDEVVVNY GFGYDESEDD YKIVALLQQR QQLKTEAMIY STRQKLWRRR
201: SSSNTCFPSG VVLANKSRSG IYINGTLNWA ATHSSSSVST IISYDMSRDV FKELLGPGCC KRGCFTMTLG DLRGCLSMVC YCKGAKADVW VMKEFGERES
301: WSKLLSIPGL TEFVRPLWIS RDFVVLLEFR SGLALYNCAN GKFQYPVQDS LSGCRDAKVY VKTLVSPRDL

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.