Factsheet for Bra020847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76370	Canola	cytosol	97.77	97.05
Bra018485.1-P	Field mustard	cytosol	72.52	71.29
Bra006310.1-P	Field mustard	cytosol	58.17	63.69
Bra006311.1-P	Field mustard	cytosol	59.65	61.48
Bra006309.1-P	Field mustard	cytosol	60.15	61.36
Bra006312.1-P	Field mustard	cytosol	60.15	60.75
KRH36548	Soybean	cytosol, plastid	31.93	32.91
Solyc01g008660.2.1	Tomato	cytosol	27.72	32.56
KRH11533	Soybean	cytosol	31.44	32.23
KRH51164	Soybean	cytosol	27.72	29.09
Bra006313.1-P	Field mustard	plasma membrane	60.64	28.86
KRH01989	Soybean	cytosol	27.97	28.83
Bra001187.1-P	Field mustard	cytosol	17.82	27.17
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.39	24.34
Bra014991.1-P	Field mustard	cytosol	20.05	21.89

Protein Annotations

EnsemblPlants:Bra020847.1	EnsemblPlants:Bra020847.1-P	EnsemblPlantsGene:Bra020847	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002545E0C	UniProt:M4DWF3
MapMan:35.1	:	:	:	:	:

Description

AT4G12560 (E=1e-151) | F-box family protein

Coordinates

chrA08:-:11700203..11701417

Molecular Weight (calculated)

46488.7 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.092

Length

404 amino acids

Sequence
(BLAST)

001: MADMPMDIIT DLFLRLPAST LVRCRVLSKP CFSLIDSPDF ISSHLHHTLQ TGDHLMILLR GPRLLVTVDL DSPDKVSDVE HPLKAGGLTE VFGSCNGLIG
101: LSNSPTDMAL FNPSTRQIHR LPAEPVDFPE GSRTRGYVFY GFGYDSVNED YKVVRMIQCK GGAADELVFG FPYEVKVFSL KMNTWKRVKR VLPAIQLLFY
201: FYYHLLYRRG YGVLACNSLH WVLPRRPGLI AFNTIIRFDL AAEEFEILTF PESLAHENID IGVLEGCLCL MCNREFTSVD VWVMKEYKVE GSWSKVFSVP
301: KPKSVESFDF MRPLLYSKDR RKVLIEVNNA KLLWFDLESK RLRTLRIKDC DSSYSAELLV SSLVLGCKGD PSEAKRRRER RALEDKMMQQ RSKRWCYMLI
401: SSWF

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.