Factsheet for PGSC0003DMT400012000

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099550.1.1	Tomato	cytosol	82.16	90.21
PGSC0003DMT400058829	Potato	cytosol	45.14	45.88
PGSC0003DMT400016096	Potato	cytosol	24.32	43.48
PGSC0003DMT400016099	Potato	cytosol	42.7	42.93
PGSC0003DMT400016057	Potato	cytosol	42.97	42.63
Bra001187.1-P	Field mustard	cytosol	21.89	30.57
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	26.22	28.96
PGSC0003DMT400076274	Potato	cytosol	28.65	27.39
PGSC0003DMT400076216	Potato	cytosol	28.38	26.99
CDY58343	Canola	cytosol	29.19	26.73
AT3G06240.1	Thale cress	cytosol	30.81	26.7
CDY08063	Canola	cytosol	28.92	26.62
PGSC0003DMT400080382	Potato	golgi	27.03	26.6
PGSC0003DMT400092235	Potato	cytosol	23.78	26.59
PGSC0003DMT400046369	Potato	cytosol	28.92	26.49
PGSC0003DMT400009785	Potato	cytosol	27.03	26.39
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	23.24	26.22
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	26.22	26.22
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	26.22	26.22
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	26.49	25.93
PGSC0003DMT400076275	Potato	nucleus	28.11	25.87
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	25.68	25.68
PGSC0003DMT400097507	Potato	cytosol	16.49	25.63
PGSC0003DMT400080369	Potato	nucleus	27.57	25.56
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	12.97	25.4
PGSC0003DMT400080239	Potato	cytosol, plastid	21.89	25.39
PGSC0003DMT400034123	Potato	golgi	25.14	25.34
PGSC0003DMT400085500	Potato	cytosol	26.22	25.33
PGSC0003DMT400006240	Potato	mitochondrion	22.43	25.3
PGSC0003DMT400055337	Potato	plastid	27.57	25.12
PGSC0003DMT400094202	Potato	cytosol	19.46	25.09
PGSC0003DMT400096925	Potato	cytosol	17.03	25.0
PGSC0003DMT400096151	Potato	cytosol	26.76	24.87
PGSC0003DMT400016504	Potato	cytosol	25.95	24.87
PGSC0003DMT400090333	Potato	cytosol	20.81	24.84
PGSC0003DMT400080292	Potato	cytosol	13.24	24.75
PGSC0003DMT400035091	Potato	mitochondrion	26.22	24.74
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	24.86	24.73
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	23.51	24.65
PGSC0003DMT400009709	Potato	cytosol	24.86	24.34
PGSC0003DMT400095263	Potato	cytosol	17.84	24.26
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	26.22	24.25
PGSC0003DMT400067303	Potato	extracellular	23.78	24.04
PGSC0003DMT400031977	Potato	cytosol	25.68	23.93
PGSC0003DMT400053926	Potato	cytosol	16.76	23.57
PGSC0003DMT400090382	Potato	cytosol	24.32	23.44
PGSC0003DMT400030295	Potato	cytosol	12.43	23.23
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	17.3	23.19
PGSC0003DMT400025788	Potato	cytosol	24.05	22.7
PGSC0003DMT400059330	Potato	extracellular	22.97	22.49
PGSC0003DMT400076284	Potato	cytosol	25.68	22.41
PGSC0003DMT400088797	Potato	cytosol	14.86	22.36
PGSC0003DMT400076282	Potato	nucleus	9.46	22.15
PGSC0003DMT400059327	Potato	cytosol	21.89	21.95
PGSC0003DMT400093810	Potato	plastid	16.49	21.79
PGSC0003DMT400059329	Potato	vacuole	22.43	20.7
PGSC0003DMT400045556	Potato	cytosol	25.68	20.56
PGSC0003DMT400015653	Potato	cytosol, plastid	25.14	18.9
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	9.19	18.89
PGSC0003DMT400053922	Potato	extracellular, golgi	20.27	17.94
PGSC0003DMT400059334	Potato	plastid	17.03	17.5
PGSC0003DMT400080293	Potato	nucleus	10.54	15.35

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102604746	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1A0J0
PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400004709	PGSC:PGSC0003DMG400004709	EnsemblPlants:PGSC0003DMT400012000	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF34	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002968386
RefSeq:XP_006349814.1	:	:	:	:	:

Description

F-box/kelch-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004709]

Coordinates

chr12:-:60211092..60212744

Molecular Weight (calculated)

41885.1 Da

IEP (calculated)

4.511

GRAVY (calculated)

-0.004

Length

370 amino acids

Sequence
(BLAST)

001: MSIFNGGYLP QELLINIFCR LPAKSIGQLR CVSNPLNSLL SNKQFLKSHF TRIHFQEPEK LILLSNSHSF HTITFKNNGV FSNSINFQQT PSDQFVDICG
101: SCNGLVLILN KDDTIVVINP ITLDFKKIPN SPFALDPVGS FSMYGFGYDY VNDDYKIVVI SRYDHDNEYE PDVLDMFMDI YSLKVGSWKR IKSSPYDHAV
201: PELASGVFVN GALHWLASKK PDYVSVIGAF VLSDEEFVEV PAPKSLDKGK FVFNKLVVVK GCLCMVVDNL EGYGNRIDVW MMKEYGVEES WTKFCVDGID
301: FYDFLKPLCL IRDDEVVVNV DGEKLMVYNL EEERSRDLEV DGILDRFDSV GTFVESLVSP VDPNLFGIEA

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.