Factsheet for PGSC0003DMT400034123

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	35.42	35.14
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	35.42	35.14
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	31.88	34.93
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	35.15	34.86
PGSC0003DMT400076216	Potato	cytosol	36.51	34.45
PGSC0003DMT400030295	Potato	cytosol	17.98	33.33
PGSC0003DMT400076274	Potato	cytosol	34.33	32.56
PGSC0003DMT400080239	Potato	cytosol, plastid	27.52	31.66
PGSC0003DMT400080382	Potato	golgi	32.43	31.65
PGSC0003DMT400096925	Potato	cytosol	21.53	31.35
KRH11340	Soybean	cytosol, peroxisome, plastid	32.7	31.33
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	34.06	31.25
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	29.97	31.16
PGSC0003DMT400095263	Potato	cytosol	22.89	30.88
PGSC0003DMT400009785	Potato	cytosol	31.88	30.87
PGSC0003DMT400080369	Potato	nucleus	33.24	30.58
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	27.25	30.49
PGSC0003DMT400016504	Potato	cytosol	31.88	30.31
PGSC0003DMT400076284	Potato	cytosol	34.88	30.19
PGSC0003DMT400009709	Potato	cytosol	31.06	30.16
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	30.79	29.89
KRH20939	Soybean	cytosol, mitochondrion	32.97	29.8
PGSC0003DMT400055337	Potato	plastid	32.7	29.56
PGSC0003DMT400096151	Potato	cytosol	31.88	29.4
PGSC0003DMT400092235	Potato	cytosol	26.43	29.31
PGSC0003DMT400085500	Potato	cytosol	30.25	28.98
PGSC0003DMT400006240	Potato	mitochondrion	25.89	28.96
PGSC0003DMT400076275	Potato	nucleus	31.61	28.86
PGSC0003DMT400031977	Potato	cytosol	31.06	28.72
PGSC0003DMT400025788	Potato	cytosol	30.52	28.57
PGSC0003DMT400035091	Potato	mitochondrion	29.97	28.06
PGSC0003DMT400076282	Potato	nucleus	11.99	27.85
KRH11341	Soybean	cytosol, plastid	29.43	27.48
PGSC0003DMT400016096	Potato	cytosol	15.26	27.05
PGSC0003DMT400090333	Potato	cytosol	22.62	26.77
KRH35044	Soybean	cytosol, extracellular, golgi	26.16	26.74
VIT_18s0041g01090.t01	Wine grape	cytosol	28.88	26.7
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	26.98	26.61
PGSC0003DMT400059327	Potato	cytosol	26.7	26.56
PGSC0003DMT400016057	Potato	cytosol	26.98	26.54
PGSC0003DMT400067303	Potato	extracellular	26.43	26.5
PGSC0003DMT400094202	Potato	cytosol	20.44	26.13
AT3G23880.1	Thale cress	cytosol	25.89	26.1
PGSC0003DMT400016099	Potato	cytosol	25.89	25.82
PGSC0003DMT400059329	Potato	vacuole	28.07	25.69
PGSC0003DMT400058829	Potato	cytosol	25.34	25.55
PGSC0003DMT400090382	Potato	cytosol	26.43	25.26
PGSC0003DMT400012000	Potato	plastid	25.34	25.14
Bra014991.1-P	Field mustard	cytosol	25.07	24.86
KRH35047	Soybean	cytosol, peroxisome, plastid	26.43	24.68
PGSC0003DMT400059330	Potato	extracellular	25.34	24.6
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	11.99	24.44
PGSC0003DMT400093810	Potato	plastid	18.53	24.29
VIT_18s0041g01100.t01	Wine grape	cytosol	16.08	24.28
PGSC0003DMT400045556	Potato	cytosol	30.52	24.24
PGSC0003DMT400046369	Potato	cytosol	26.43	24.01
PGSC0003DMT400080292	Potato	cytosol	12.81	23.74
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.99	23.28
KRH72048	Soybean	cytosol	22.34	23.23
PGSC0003DMT400053922	Potato	extracellular, golgi	26.43	23.21
PGSC0003DMT400097507	Potato	cytosol	14.71	22.69
PGSC0003DMT400015653	Potato	cytosol, plastid	29.97	22.36
PGSC0003DMT400059334	Potato	plastid	21.25	21.67
PGSC0003DMT400088797	Potato	cytosol	14.17	21.14
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	15.8	21.01
PGSC0003DMT400053926	Potato	cytosol	14.71	20.53
PGSC0003DMT400080293	Potato	nucleus	9.54	13.78

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
UniProt:M1B063	PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400013111	PGSC:PGSC0003DMG400013111	EnsemblPlants:PGSC0003DMT400034123	PFscan:PS50181
PANTHER:PTHR44355	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00029638F3
SEG:seg	:	:	:	:	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400013111]

Coordinates

chr5:-:49049885..49051148

Molecular Weight (calculated)

42704.1 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.249

Length

367 amino acids

Sequence
(BLAST)

001: MLYLPNEIIF EILLRLPVKS IIKFKSVSKS WLSLLSSPRF INTHLNFSKN NHKNVPQKLL LLTPNQNLSK KQYTLFSSIS ETIVRVDLDY PVKSPSCVTQ
101: FIGSCDGLIC FSVENSLILW NPSTRKWKKI PKESIFMNQD YYCTYGFGYD EFNDDYKLIL VYSSKIKNIG YNEVKVYSLK TNSWKRIKGF VNGYVYSNSG
201: VLMNGIIHWD SRPHRDFNGN DSKIVYFNLV SEKLGKLDLP SYDENEDVVW DLMSSKESLF GFCHSESQGA VDIWVMKEYG IKESWIKFAS VPYYVVPGIF
301: DTSMFINEDG EVLLIDGERL VLFNTRNNIY KDLRIHIPDT RRRIDMATYN ETLVSPVFDD EDGCEFW

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.