Factsheet for PGSC0003DMT400067303

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	91.53	77.37
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	71.31	70.16
PGSC0003DMT400059330	Potato	extracellular	65.57	63.49
PGSC0003DMT400090382	Potato	cytosol	51.37	48.96
PGSC0003DMT400080293	Potato	nucleus	33.88	48.82
PGSC0003DMT400059327	Potato	cytosol	49.18	48.78
PGSC0003DMT400080292	Potato	cytosol	26.23	48.48
PGSC0003DMT400093810	Potato	plastid	36.61	47.86
PGSC0003DMT400088797	Potato	cytosol	30.05	44.72
PGSC0003DMT400059329	Potato	vacuole	45.9	41.9
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	20.49	41.67
PGSC0003DMT400053926	Potato	cytosol	28.69	39.92
PGSC0003DMT400053922	Potato	extracellular, golgi	44.54	39.0
PGSC0003DMT400080382	Potato	golgi	39.89	38.83
PGSC0003DMT400076275	Potato	nucleus	42.08	38.31
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	28.69	38.04
PGSC0003DMT400009785	Potato	cytosol	38.8	37.47
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	38.25	37.04
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	32.79	36.59
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	34.97	36.26
PGSC0003DMT400009709	Potato	cytosol	37.16	35.98
PGSC0003DMT400059334	Potato	plastid	34.7	35.28
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	38.52	35.25
PGSC0003DMT400035091	Potato	mitochondrion	37.7	35.2
PGSC0003DMT400080239	Potato	cytosol, plastid	30.33	34.8
PGSC0003DMT400006240	Potato	mitochondrion	31.15	34.76
PGSC0003DMT400080369	Potato	nucleus	37.7	34.59
PGSC0003DMT400055337	Potato	plastid	37.98	34.24
PGSC0003DMT400090333	Potato	cytosol	28.96	34.19
PGSC0003DMT400094202	Potato	cytosol	26.5	33.8
PGSC0003DMT400096925	Potato	cytosol	23.22	33.73
PGSC0003DMT400016504	Potato	cytosol	35.52	33.68
PGSC0003DMT400096151	Potato	cytosol	36.61	33.67
PGSC0003DMT400085500	Potato	cytosol	34.97	33.42
PGSC0003DMT400031977	Potato	cytosol	36.07	33.25
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	32.51	32.16
PGSC0003DMT400097507	Potato	cytosol	20.77	31.93
PGSC0003DMT400076282	Potato	nucleus	13.66	31.65
PGSC0003DMT400095263	Potato	cytosol	23.5	31.62
PGSC0003DMT400076284	Potato	cytosol	36.34	31.37
PGSC0003DMT400092235	Potato	cytosol	28.14	31.12
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	27.87	30.45
PGSC0003DMT400045556	Potato	cytosol	37.43	29.65
KRH11340	Soybean	cytosol, peroxisome, plastid	30.33	28.98
PGSC0003DMT400076216	Potato	cytosol	30.33	28.53
KRH20939	Soybean	cytosol, mitochondrion	30.87	27.83
PGSC0003DMT400076274	Potato	cytosol	28.69	27.13
KRH11341	Soybean	cytosol, plastid	28.96	26.97
PGSC0003DMT400015653	Potato	cytosol, plastid	36.07	26.83
PGSC0003DMT400034123	Potato	golgi	26.5	26.43
VIT_18s0041g01100.t01	Wine grape	cytosol	17.49	26.34
KRH35044	Soybean	cytosol, extracellular, golgi	25.68	26.18
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	25.96	25.68
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	25.96	25.68
Bra014991.1-P	Field mustard	cytosol	25.68	25.41
PGSC0003DMT400025788	Potato	cytosol	26.78	25.0
PGSC0003DMT400016096	Potato	cytosol	13.93	24.64
PGSC0003DMT400058829	Potato	cytosol	24.04	24.18
AT3G23880.1	Thale cress	cytosol	23.77	23.9
PGSC0003DMT400012000	Potato	plastid	24.04	23.78
KRH72048	Soybean	cytosol	22.4	23.23
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.75	22.75
KRH35047	Soybean	cytosol, peroxisome, plastid	24.32	22.65
VIT_18s0041g01090.t01	Wine grape	cytosol	24.32	22.42
PGSC0003DMT400030295	Potato	cytosol	12.02	22.22
PGSC0003DMT400046369	Potato	cytosol	23.77	21.53
PGSC0003DMT400016099	Potato	cytosol	21.31	21.2
PGSC0003DMT400016057	Potato	cytosol	21.58	21.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400067303	EnsemblPlantsGene:PGSC0003DMG400026173	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:Gal_Oxase/kelch_b-propeller	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF07734
PGSC:PGSC0003DMG400026173	SEG:seg	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000295EBEB
UniProt:M1CH21	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026173]

Coordinates

chr7:-:47257362..47258462

Molecular Weight (calculated)

41593.9 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.133

Length

366 amino acids

Sequence
(BLAST)

001: MAILLKLPPK SMLKFMCVSK PWLRPISSRK LVKTHVRLTA SDKECSHHRV IFQDSTGNFK VSRLPPLFHK EQRVELFNMD SPMEKPNIYT KIVGSVNGLI
101: CMYSKIEEPV LWNPTIRKCK KLPTFEANLR RDCSYYLNYG FGYDESHDDY KVVVVQCISD DGGSYDTVVN IYSLRTDSWK TIDKFQGNFL INSSGKFVDG
201: KLYWALSADV NTFNTCNIIS LDLADETWKS LMLPTSYGEG SYPLTLGVFG NDLSVLCPNC HEGTNSDVWI MKHSGVEVSW TKIFTIDHPK DLGEFIFFSS
301: IFSIPSCQSN KGEFLLLLPP VIMIYDGSTK QLEAVDHFEE CFPAEIYVES LVDPLLIAHN HLADNS

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.