Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007400.1.1 | Tomato | cytosol | 82.03 | 82.89 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 47.66 | 66.3 |
| PGSC0003DMT400080292 | Potato | cytosol | 29.17 | 56.57 |
| PGSC0003DMT400093810 | Potato | plastid | 40.36 | 55.36 |
| PGSC0003DMT400059327 | Potato | cytosol | 52.86 | 55.01 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 50.26 | 51.88 |
| PGSC0003DMT400067303 | Potato | extracellular | 48.96 | 51.37 |
| PGSC0003DMT400059329 | Potato | vacuole | 52.6 | 50.37 |
| PGSC0003DMT400088797 | Potato | cytosol | 32.03 | 50.0 |
| PGSC0003DMT400059330 | Potato | extracellular | 47.14 | 47.88 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 21.88 | 46.67 |
| PGSC0003DMT400053926 | Potato | cytosol | 31.77 | 46.39 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 48.18 | 44.26 |
| PGSC0003DMT400059334 | Potato | plastid | 38.28 | 40.83 |
| PGSC0003DMT400080382 | Potato | golgi | 37.76 | 38.56 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 32.29 | 37.8 |
| PGSC0003DMT400009785 | Potato | cytosol | 37.24 | 37.73 |
| PGSC0003DMT400009709 | Potato | cytosol | 36.72 | 37.3 |
| PGSC0003DMT400076275 | Potato | nucleus | 38.54 | 36.82 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 36.2 | 36.77 |
| PGSC0003DMT400096151 | Potato | cytosol | 36.98 | 35.68 |
| PGSC0003DMT400095263 | Potato | cytosol | 25.0 | 35.29 |
| PGSC0003DMT400031977 | Potato | cytosol | 36.46 | 35.26 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 36.2 | 34.75 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 35.42 | 34.69 |
| PGSC0003DMT400080369 | Potato | nucleus | 35.94 | 34.59 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 29.43 | 34.45 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 31.51 | 34.28 |
| PGSC0003DMT400092235 | Potato | cytosol | 29.43 | 34.14 |
| PGSC0003DMT400096925 | Potato | cytosol | 22.4 | 34.13 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 32.81 | 34.05 |
| PGSC0003DMT400055337 | Potato | plastid | 35.68 | 33.74 |
| PGSC0003DMT400085500 | Potato | cytosol | 33.59 | 33.68 |
| PGSC0003DMT400016504 | Potato | cytosol | 33.59 | 33.42 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 27.6 | 33.23 |
| PGSC0003DMT400076284 | Potato | cytosol | 35.68 | 32.31 |
| PGSC0003DMT400094202 | Potato | cytosol | 23.7 | 31.71 |
| PGSC0003DMT400090333 | Potato | cytosol | 25.52 | 31.61 |
| PGSC0003DMT400076274 | Potato | cytosol | 30.99 | 30.75 |
| PGSC0003DMT400097507 | Potato | cytosol | 18.75 | 30.25 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 29.95 | 30.03 |
| PGSC0003DMT400045556 | Potato | cytosol | 35.68 | 29.65 |
| PGSC0003DMT400076216 | Potato | cytosol | 29.69 | 29.31 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 25.52 | 29.25 |
| PGSC0003DMT400080293 | Potato | nucleus | 19.27 | 29.13 |
| KRH20939 | Soybean | cytosol, mitochondrion | 30.73 | 29.06 |
| KRH11341 | Soybean | cytosol, plastid | 28.91 | 28.24 |
| PGSC0003DMT400076282 | Potato | nucleus | 11.46 | 27.85 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 34.9 | 27.24 |
| PGSC0003DMT400034123 | Potato | golgi | 25.26 | 26.43 |
| PGSC0003DMT400025788 | Potato | cytosol | 26.82 | 26.28 |
| Bra014991.1-P | Field mustard | cytosol | 25.0 | 25.95 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 24.74 | 25.68 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 24.74 | 25.68 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 23.44 | 25.07 |
| KRH72048 | Soybean | cytosol | 22.92 | 24.93 |
| AT3G23880.1 | Thale cress | cytosol | 23.44 | 24.73 |
| PGSC0003DMT400016057 | Potato | cytosol | 23.7 | 24.4 |
| PGSC0003DMT400012000 | Potato | plastid | 23.44 | 24.32 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 24.74 | 24.17 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 24.48 | 23.68 |
| PGSC0003DMT400016096 | Potato | cytosol | 12.76 | 23.67 |
| PGSC0003DMT400016099 | Potato | cytosol | 22.66 | 23.64 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 14.84 | 23.46 |
| PGSC0003DMT400058829 | Potato | cytosol | 22.14 | 23.35 |
| PGSC0003DMT400046369 | Potato | cytosol | 24.22 | 23.02 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 9.9 | 20.11 |
| PGSC0003DMT400030295 | Potato | cytosol | 9.38 | 18.18 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102596509 | MapMan:19.2.2.8.1.4.6 | ProteinID:ABO92994 | ProteinID:ABO92994.1 | EMBL:EF514212 |
| InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | UniProt:M1DK98 | PFAM:PF00646 | PFAM:PF07734 |
| EnsemblPlantsGene:PGSC0003DMG400039953 | PGSC:PGSC0003DMG400039953 | EnsemblPlants:PGSC0003DMT400090382 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002950B84 | RefSeq:XP_006363253.1 |
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039953]
Coordinates
chr5:-:5402006..5403160
Molecular Weight (calculated)
43906.7 Da
IEP (calculated)
8.344
GRAVY (calculated)
-0.163
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDSIISFF LPDELITEIL LRLPIKSLSK FMCVSKSWLQ LISSPAFVKN HIKLTANDKG YIYHRLIFRN TNDDFKFCPL PALFTKQQLI EELFDIDSPI
101: ERTTLSTHIV GSVNGLICVA HVRQREAYIW NPTITKSKEL PKSTSNLCSD GIKCGFGYDE SRDDYKVVFI DYPIRRHNHR TVVNIYSLRT NSWTTLHDQL
201: QGIFLLNLHG RFVNGKLYWT SSTCINNYKV CNITSFDFAD GTWESLELPS CGKDNSYINV GVVGSDLSLL YTCQRGAATS NVWIMKHSGV NVSWTKLFTI
301: KYPQNIKIQR CVAPAFTFSI HIRHSEILLL LDSAIMIYDG STRQLKHTFH VNQCEEIYVE SLVNPLKISD QGRRNQESPQ SSHS
101: ERTTLSTHIV GSVNGLICVA HVRQREAYIW NPTITKSKEL PKSTSNLCSD GIKCGFGYDE SRDDYKVVFI DYPIRRHNHR TVVNIYSLRT NSWTTLHDQL
201: QGIFLLNLHG RFVNGKLYWT SSTCINNYKV CNITSFDFAD GTWESLELPS CGKDNSYINV GVVGSDLSLL YTCQRGAATS NVWIMKHSGV NVSWTKLFTI
301: KYPQNIKIQR CVAPAFTFSI HIRHSEILLL LDSAIMIYDG STRQLKHTFH VNQCEEIYVE SLVNPLKISD QGRRNQESPQ SSHS
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.