Factsheet for PGSC0003DMT400059327

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090382	Potato	cytosol	55.01	52.86
PGSC0003DMT400088797	Potato	cytosol	32.79	49.19
PGSC0003DMT400067303	Potato	extracellular	48.78	49.18
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	49.32	48.92
PGSC0003DMT400080292	Potato	cytosol	25.47	47.47
PGSC0003DMT400093810	Potato	plastid	35.77	47.14
PGSC0003DMT400059330	Potato	extracellular	46.61	45.5
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	21.68	44.44
PGSC0003DMT400059329	Potato	vacuole	48.24	44.39
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	32.79	43.84
PGSC0003DMT400053926	Potato	cytosol	30.62	42.97
PGSC0003DMT400053922	Potato	extracellular, golgi	47.7	42.11
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	34.69	39.02
PGSC0003DMT400080382	Potato	golgi	39.57	38.83
PGSC0003DMT400009785	Potato	cytosol	39.02	37.99
PGSC0003DMT400059334	Potato	plastid	36.86	37.78
PGSC0003DMT400009709	Potato	cytosol	38.21	37.3
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	37.94	37.04
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	34.96	36.54
PGSC0003DMT400080239	Potato	cytosol, plastid	31.44	36.36
PGSC0003DMT400076275	Potato	nucleus	39.57	36.32
PGSC0003DMT400006240	Potato	mitochondrion	31.98	35.98
PGSC0003DMT400016504	Potato	cytosol	37.13	35.49
PGSC0003DMT400035091	Potato	mitochondrion	37.67	35.46
PGSC0003DMT400095263	Potato	cytosol	25.75	34.93
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	37.4	34.5
PGSC0003DMT400055337	Potato	plastid	37.94	34.48
PGSC0003DMT400080369	Potato	nucleus	37.13	34.34
PGSC0003DMT400096151	Potato	cytosol	36.86	34.17
PGSC0003DMT400096925	Potato	cytosol	23.31	34.13
PGSC0003DMT400094202	Potato	cytosol	25.75	33.1
PGSC0003DMT400090333	Potato	cytosol	27.64	32.9
PGSC0003DMT400085500	Potato	cytosol	33.88	32.64
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	32.52	32.43
PGSC0003DMT400092235	Potato	cytosol	29.0	32.33
PGSC0003DMT400031977	Potato	cytosol	34.69	32.24
PGSC0003DMT400076284	Potato	cytosol	36.04	31.37
KRH11340	Soybean	cytosol, peroxisome, plastid	31.44	30.29
PGSC0003DMT400097507	Potato	cytosol	19.51	30.25
PGSC0003DMT400076216	Potato	cytosol	31.71	30.08
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	26.83	29.55
PGSC0003DMT400045556	Potato	cytosol	36.86	29.44
KRH20939	Soybean	cytosol, mitochondrion	31.98	29.06
PGSC0003DMT400076282	Potato	nucleus	12.2	28.48
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	28.46	28.38
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	28.46	28.38
PGSC0003DMT400076274	Potato	cytosol	29.0	27.65
PGSC0003DMT400015653	Potato	cytosol, plastid	36.86	27.64
PGSC0003DMT400080293	Potato	nucleus	18.43	26.77
PGSC0003DMT400034123	Potato	golgi	26.56	26.7
PGSC0003DMT400025788	Potato	cytosol	28.18	26.53
KRH11341	Soybean	cytosol, plastid	28.18	26.46
Bra014991.1-P	Field mustard	cytosol	26.29	26.22
KRH35044	Soybean	cytosol, extracellular, golgi	24.93	25.63
AT3G23880.1	Thale cress	cytosol	25.2	25.55
KRH72048	Soybean	cytosol	24.39	25.5
VIT_18s0041g01100.t01	Wine grape	cytosol	16.53	25.1
KRH35047	Soybean	cytosol, peroxisome, plastid	25.75	24.17
PGSC0003DMT400016096	Potato	cytosol	13.55	24.15
VIT_18s0041g01090.t01	Wine grape	cytosol	25.75	23.93
PGSC0003DMT400058829	Potato	cytosol	23.58	23.9
PGSC0003DMT400016099	Potato	cytosol	22.76	22.83
PGSC0003DMT400016057	Potato	cytosol	23.04	22.79
PGSC0003DMT400046369	Potato	cytosol	24.39	22.28
PGSC0003DMT400012000	Potato	plastid	21.95	21.89
PGSC0003DMT400030295	Potato	cytosol	11.38	21.21
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.57	20.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400059327	EnsemblPlantsGene:PGSC0003DMG401023052	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF00646	PFscan:PS50181	PGSC:PGSC0003DMG401023052	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0002961327	UniProt:M1C444	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401023052]

Coordinates

chr5:-:5462979..5464210

Molecular Weight (calculated)

41871.2 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.031

Length

369 amino acids

Sequence
(BLAST)

001: MSDSVSVLPH EIIVQILLRL PPKSLLEFMC VSKSWHQLIS SPNFVNTHLK LTVNHTHRVI FSGRNRNFKS CSVPPVFYNE QLVELFDVDS PVDIPFISAW
101: IVGSANGLIC LCYQDDKKFL WNPTISKSRE LPKLEATGYF DCRRGFGYDE LHDDYKVVFV HFYYVGGNNT SLRTVVNIYS LRNDSWRTLH DQLQDTFLIN
201: SLGKFVNGKL YWNSTIGTGN GGRNLCITSL DLADETWGTL ELPNCGKVGP NYMMGVVGSD LSLICDCHLD STTSDLWIMK HCGVNVSWTK LFTINCARYA
301: WLYMPCPPTT TFSIQFPQQN NGELFLFLRS AIMIYDCSTR QLKRTVAVEG YNATEIYVES LVNPLTISG

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.