Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 44.12 | 36.59 |
| PGSC0003DMT400096925 | Potato | cytosol | 33.09 | 35.71 |
| PGSC0003DMT400080382 | Potato | golgi | 46.32 | 33.51 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 38.97 | 33.23 |
| PGSC0003DMT400009709 | Potato | cytosol | 45.96 | 33.07 |
| PGSC0003DMT400076275 | Potato | nucleus | 47.79 | 32.34 |
| PGSC0003DMT400009785 | Potato | cytosol | 44.49 | 31.93 |
| PGSC0003DMT400080369 | Potato | nucleus | 43.75 | 29.82 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 38.6 | 29.75 |
| PGSC0003DMT400055337 | Potato | plastid | 43.75 | 29.31 |
| PGSC0003DMT400016504 | Potato | cytosol | 41.54 | 29.27 |
| PGSC0003DMT400096151 | Potato | cytosol | 42.28 | 28.89 |
| PGSC0003DMT400031977 | Potato | cytosol | 40.81 | 27.96 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 40.81 | 27.75 |
| PGSC0003DMT400085500 | Potato | cytosol | 38.24 | 27.15 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 37.5 | 26.98 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 36.4 | 26.61 |
| PGSC0003DMT400092235 | Potato | cytosol | 31.99 | 26.28 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 37.13 | 25.77 |
| PGSC0003DMT400059327 | Potato | cytosol | 34.93 | 25.75 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 30.88 | 25.61 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 16.91 | 25.56 |
| PGSC0003DMT400090333 | Potato | cytosol | 29.04 | 25.48 |
| PGSC0003DMT400094202 | Potato | cytosol | 26.84 | 25.44 |
| PGSC0003DMT400076284 | Potato | cytosol | 39.34 | 25.24 |
| PGSC0003DMT400059330 | Potato | extracellular | 34.93 | 25.13 |
| PGSC0003DMT400045556 | Potato | cytosol | 42.65 | 25.11 |
| PGSC0003DMT400090382 | Potato | cytosol | 35.29 | 25.0 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 33.82 | 24.86 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 30.51 | 24.78 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 39.34 | 24.49 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 16.91 | 24.34 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 42.65 | 23.58 |
| PGSC0003DMT400067303 | Potato | extracellular | 31.62 | 23.5 |
| PGSC0003DMT400053926 | Potato | cytosol | 22.43 | 23.19 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 32.35 | 22.98 |
| PGSC0003DMT400034123 | Potato | golgi | 30.88 | 22.89 |
| PGSC0003DMT400076216 | Potato | cytosol | 32.72 | 22.88 |
| PGSC0003DMT400059329 | Potato | vacuole | 33.46 | 22.69 |
| KRH11341 | Soybean | cytosol, plastid | 32.72 | 22.65 |
| PGSC0003DMT400059334 | Potato | plastid | 29.78 | 22.5 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 30.51 | 22.43 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 30.51 | 22.43 |
| PGSC0003DMT400076274 | Potato | cytosol | 31.62 | 22.22 |
| PGSC0003DMT400080292 | Potato | cytosol | 16.18 | 22.22 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.09 | 22.17 |
| KRH72048 | Soybean | cytosol | 27.57 | 21.25 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 21.32 | 21.01 |
| PGSC0003DMT400025788 | Potato | cytosol | 29.78 | 20.66 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 31.62 | 20.57 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 26.84 | 20.33 |
| PGSC0003DMT400093810 | Potato | plastid | 20.59 | 20.0 |
| AT3G23880.1 | Thale cress | cytosol | 26.47 | 19.78 |
| PGSC0003DMT400046369 | Potato | cytosol | 28.68 | 19.31 |
| Bra014991.1-P | Field mustard | cytosol | 26.1 | 19.19 |
| PGSC0003DMT400097507 | Potato | cytosol | 16.18 | 18.49 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.47 | 18.14 |
| PGSC0003DMT400012000 | Potato | plastid | 24.26 | 17.84 |
| PGSC0003DMT400016057 | Potato | cytosol | 24.26 | 17.69 |
| PGSC0003DMT400088797 | Potato | cytosol | 15.81 | 17.48 |
| PGSC0003DMT400016099 | Potato | cytosol | 23.53 | 17.39 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 24.63 | 17.05 |
| PGSC0003DMT400058829 | Potato | cytosol | 22.43 | 16.76 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 14.71 | 16.46 |
| PGSC0003DMT400016096 | Potato | cytosol | 11.4 | 14.98 |
| PGSC0003DMT400076282 | Potato | nucleus | 7.35 | 12.66 |
| PGSC0003DMT400080293 | Potato | nucleus | 11.4 | 12.2 |
| PGSC0003DMT400030295 | Potato | cytosol | 5.88 | 8.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400095263 | EnsemblPlantsGene:PGSC0003DMG400044834 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| PFAM:PF00646 | PFscan:PS50181 | PGSC:PGSC0003DMG400044834 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00029603E4 | UniProt:M1DVX0 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044834]
Coordinates
chr7:+:31922109..31922927
Molecular Weight (calculated)
31265.2 Da
IEP (calculated)
6.415
GRAVY (calculated)
-0.221
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFEKDDVFK GKFIVHSTHT LPSEFVTEIL SRLLVKSLWK FRCISKSWLS LISSLEFIKN HLKKYQILEN NKDYTQHSVV LTYRHPPIKG YQYFLKNYSV
101: TSLLNDSVIE HCNLDYPMND AGTHVWVVGS INGLFCLAIE EAEMFMWNPS IRKFKQFPNC RLHTSHIYGF GYDEFCDDYK VVSINKSESP LQGEVNLYSL
201: KADSWKSVDD CPSEGILNVF GKFLNGKLYW PATVVGLDTS VDWSIVSFDL ADEKWGKVEK PCSQEGGSFS SV
101: TSLLNDSVIE HCNLDYPMND AGTHVWVVGS INGLFCLAIE EAEMFMWNPS IRKFKQFPNC RLHTSHIYGF GYDEFCDDYK VVSINKSESP LQGEVNLYSL
201: KADSWKSVDD CPSEGILNVF GKFLNGKLYW PATVVGLDTS VDWSIVSFDL ADEKWGKVEK PCSQEGGSFS SV
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.