Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400009785 | Potato | cytosol | 58.51 | 58.05 |
PGSC0003DMT400009709 | Potato | cytosol | 55.85 | 55.56 |
PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 48.4 | 55.49 |
PGSC0003DMT400076275 | Potato | nucleus | 51.33 | 48.01 |
PGSC0003DMT400095263 | Potato | cytosol | 33.51 | 46.32 |
PGSC0003DMT400080369 | Potato | nucleus | 47.61 | 44.86 |
PGSC0003DMT400006240 | Potato | mitochondrion | 39.1 | 44.82 |
PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 44.95 | 44.71 |
PGSC0003DMT400055337 | Potato | plastid | 48.14 | 44.58 |
PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 47.34 | 44.5 |
PGSC0003DMT400076282 | Potato | nucleus | 18.62 | 44.3 |
PGSC0003DMT400016504 | Potato | cytosol | 44.95 | 43.78 |
PGSC0003DMT400031977 | Potato | cytosol | 45.21 | 42.82 |
PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 40.16 | 42.78 |
PGSC0003DMT400080239 | Potato | cytosol, plastid | 36.17 | 42.63 |
PGSC0003DMT400035091 | Potato | mitochondrion | 44.41 | 42.6 |
PGSC0003DMT400096151 | Potato | cytosol | 44.15 | 41.71 |
PGSC0003DMT400090333 | Potato | cytosol | 34.31 | 41.61 |
PGSC0003DMT400094202 | Potato | cytosol | 31.65 | 41.46 |
PGSC0003DMT400076284 | Potato | cytosol | 46.01 | 40.8 |
PGSC0003DMT400085500 | Potato | cytosol | 41.22 | 40.47 |
PGSC0003DMT400067303 | Potato | extracellular | 38.83 | 39.89 |
PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 39.36 | 39.78 |
PGSC0003DMT400092235 | Potato | cytosol | 34.84 | 39.58 |
PGSC0003DMT400059327 | Potato | cytosol | 38.83 | 39.57 |
PGSC0003DMT400097507 | Potato | cytosol | 25.0 | 39.5 |
PGSC0003DMT400096925 | Potato | cytosol | 26.06 | 38.89 |
PGSC0003DMT400090382 | Potato | cytosol | 38.56 | 37.76 |
PGSC0003DMT400059330 | Potato | extracellular | 36.44 | 36.24 |
PGSC0003DMT400045556 | Potato | cytosol | 44.41 | 36.15 |
PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 34.31 | 34.86 |
PGSC0003DMT400015653 | Potato | cytosol, plastid | 45.48 | 34.76 |
KRH11340 | Soybean | cytosol, peroxisome, plastid | 35.37 | 34.73 |
KRH20939 | Soybean | cytosol, mitochondrion | 35.37 | 32.76 |
PGSC0003DMT400076216 | Potato | cytosol | 33.78 | 32.65 |
PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 28.99 | 32.54 |
PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 31.91 | 32.43 |
PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 31.91 | 32.43 |
PGSC0003DMT400034123 | Potato | golgi | 31.65 | 32.43 |
PGSC0003DMT400059329 | Potato | vacuole | 34.57 | 32.42 |
PGSC0003DMT400076274 | Potato | cytosol | 33.24 | 32.3 |
PGSC0003DMT400093810 | Potato | plastid | 23.94 | 32.14 |
PGSC0003DMT400080292 | Potato | cytosol | 16.76 | 31.82 |
PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 23.14 | 31.52 |
PGSC0003DMT400088797 | Potato | cytosol | 20.21 | 30.89 |
PGSC0003DMT400025788 | Potato | cytosol | 32.18 | 30.87 |
VIT_18s0041g01100.t01 | Wine grape | cytosol | 19.95 | 30.86 |
KRH35044 | Soybean | cytosol, extracellular, golgi | 29.26 | 30.64 |
PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 14.63 | 30.56 |
KRH11341 | Soybean | cytosol, plastid | 30.85 | 29.52 |
PGSC0003DMT400053922 | Potato | extracellular, golgi | 32.45 | 29.19 |
PGSC0003DMT400016096 | Potato | cytosol | 15.96 | 28.99 |
PGSC0003DMT400053926 | Potato | cytosol | 20.21 | 28.9 |
PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 13.83 | 27.51 |
PGSC0003DMT400046369 | Potato | cytosol | 29.26 | 27.23 |
PGSC0003DMT400058829 | Potato | cytosol | 26.33 | 27.2 |
KRH72048 | Soybean | cytosol | 25.53 | 27.2 |
PGSC0003DMT400012000 | Potato | plastid | 26.6 | 27.03 |
KRH35047 | Soybean | cytosol, peroxisome, plastid | 28.19 | 26.97 |
PGSC0003DMT400059334 | Potato | plastid | 25.8 | 26.94 |
VIT_18s0041g01090.t01 | Wine grape | cytosol | 28.19 | 26.7 |
Bra014991.1-P | Field mustard | cytosol | 26.06 | 26.49 |
AT3G23880.1 | Thale cress | cytosol | 25.53 | 26.37 |
PGSC0003DMT400016057 | Potato | cytosol | 25.53 | 25.74 |
PGSC0003DMT400016099 | Potato | cytosol | 24.73 | 25.27 |
PGSC0003DMT400080293 | Potato | nucleus | 16.49 | 24.41 |
PGSC0003DMT400030295 | Potato | cytosol | 12.77 | 24.24 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400080382 | EnsemblPlantsGene:PGSC0003DMG400031300 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
PFAM:PF00646 | PFscan:PS50181 | PGSC:PGSC0003DMG400031300 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
TIGRFAMs:TIGR01640 | UniParc:UPI00029489B6 | UniProt:M1D3F7 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031300]
Coordinates
chr9:+:58849836..58850966
Molecular Weight (calculated)
43387.1 Da
IEP (calculated)
5.198
GRAVY (calculated)
-0.297
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMQDSILVL PEELVIEILL KLPIKSLLKF KCISKSWLAL ISSSEFVKTH LRLNANNKEY THHKVMMRCI SNYGFKSCSL TSLFNESCVT EAKDLDYPTK
101: SYGWERDRYD VSILGSINGL ICLVNDDKEL FLWNPSIRKH KKLPDPRTSL PPQGGPRRAY GFGYDEVHDD YKVVIFNEIE TNMIREFEVK MYSLKSDSWR
201: CVDDCPRMAQ FNVSGKFVNG KLHWDSTSTY WKSDLATFCD GYRDPNIISI DLADEKWGEM DQPCDDVGEI ALRVGVLGSD LSVLCNCNML LVDVWVMKEY
301: GVKESWTKMF TIKYTPRSGY LGQRCLHMSN EGEILVVIKG EFMIYNPKDD SLRYSEVINS DKWDANEIYV ESLVCP
101: SYGWERDRYD VSILGSINGL ICLVNDDKEL FLWNPSIRKH KKLPDPRTSL PPQGGPRRAY GFGYDEVHDD YKVVIFNEIE TNMIREFEVK MYSLKSDSWR
201: CVDDCPRMAQ FNVSGKFVNG KLHWDSTSTY WKSDLATFCD GYRDPNIISI DLADEKWGEM DQPCDDVGEI ALRVGVLGSD LSVLCNCNML LVDVWVMKEY
301: GVKESWTKMF TIKYTPRSGY LGQRCLHMSN EGEILVVIKG EFMIYNPKDD SLRYSEVINS DKWDANEIYV ESLVCP
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.