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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400009785 Potato cytosol 58.51 58.05
PGSC0003DMT400009709 Potato cytosol 55.85 55.56
PGSC0003DMT400009708 Potato cytosol, peroxisome, plastid 48.4 55.49
PGSC0003DMT400076275 Potato nucleus 51.33 48.01
PGSC0003DMT400095263 Potato cytosol 33.51 46.32
PGSC0003DMT400080369 Potato nucleus 47.61 44.86
PGSC0003DMT400006240 Potato mitochondrion 39.1 44.82
PGSC0003DMT400035180 Potato golgi, nucleus, plastid 44.95 44.71
PGSC0003DMT400055337 Potato plastid 48.14 44.58
PGSC0003DMT400015598 Potato cytosol, nucleus, peroxisome, plastid 47.34 44.5
PGSC0003DMT400076282 Potato nucleus 18.62 44.3
PGSC0003DMT400016504 Potato cytosol 44.95 43.78
PGSC0003DMT400031977 Potato cytosol 45.21 42.82
PGSC0003DMT400094422 Potato extracellular, golgi, plastid 40.16 42.78
PGSC0003DMT400080239 Potato cytosol, plastid 36.17 42.63
PGSC0003DMT400035091 Potato mitochondrion 44.41 42.6
PGSC0003DMT400096151 Potato cytosol 44.15 41.71
PGSC0003DMT400090333 Potato cytosol 34.31 41.61
PGSC0003DMT400094202 Potato cytosol 31.65 41.46
PGSC0003DMT400076284 Potato cytosol 46.01 40.8
PGSC0003DMT400085500 Potato cytosol 41.22 40.47
PGSC0003DMT400067303 Potato extracellular 38.83 39.89
PGSC0003DMT400059337 Potato cytosol, plasma membrane 39.36 39.78
PGSC0003DMT400092235 Potato cytosol 34.84 39.58
PGSC0003DMT400059327 Potato cytosol 38.83 39.57
PGSC0003DMT400097507 Potato cytosol 25.0 39.5
PGSC0003DMT400096925 Potato cytosol 26.06 38.89
PGSC0003DMT400090382 Potato cytosol 38.56 37.76
PGSC0003DMT400059330 Potato extracellular 36.44 36.24
PGSC0003DMT400045556 Potato cytosol 44.41 36.15
PGSC0003DMT400058350 Potato cytosol, extracellular, plasma membrane, plastid 34.31 34.86
PGSC0003DMT400015653 Potato cytosol, plastid 45.48 34.76
KRH11340 Soybean cytosol, peroxisome, plastid 35.37 34.73
KRH20939 Soybean cytosol, mitochondrion 35.37 32.76
PGSC0003DMT400076216 Potato cytosol 33.78 32.65
PGSC0003DMT400055826 Potato cytosol, extracellular, plasma membrane 28.99 32.54
PGSC0003DMT400008824 Potato extracellular, golgi, plastid 31.91 32.43
PGSC0003DMT400008825 Potato extracellular, golgi, plastid 31.91 32.43
PGSC0003DMT400034123 Potato golgi 31.65 32.43
PGSC0003DMT400059329 Potato vacuole 34.57 32.42
PGSC0003DMT400076274 Potato cytosol 33.24 32.3
PGSC0003DMT400093810 Potato plastid 23.94 32.14
PGSC0003DMT400080292 Potato cytosol 16.76 31.82
PGSC0003DMT400096882 Potato cytosol, plasma membrane, plastid 23.14 31.52
PGSC0003DMT400088797 Potato cytosol 20.21 30.89
PGSC0003DMT400025788 Potato cytosol 32.18 30.87
VIT_18s0041g01100.t01 Wine grape cytosol 19.95 30.86
KRH35044 Soybean cytosol, extracellular, golgi 29.26 30.64
PGSC0003DMT400031274 Potato extracellular, plasma membrane 14.63 30.56
KRH11341 Soybean cytosol, plastid 30.85 29.52
PGSC0003DMT400053922 Potato extracellular, golgi 32.45 29.19
PGSC0003DMT400016096 Potato cytosol 15.96 28.99
PGSC0003DMT400053926 Potato cytosol 20.21 28.9
PGSC0003DMT400054287 Potato cytosol, extracellular, mitochondrion, plastid 13.83 27.51
PGSC0003DMT400046369 Potato cytosol 29.26 27.23
PGSC0003DMT400058829 Potato cytosol 26.33 27.2
KRH72048 Soybean cytosol 25.53 27.2
PGSC0003DMT400012000 Potato plastid 26.6 27.03
KRH35047 Soybean cytosol, peroxisome, plastid 28.19 26.97
PGSC0003DMT400059334 Potato plastid 25.8 26.94
VIT_18s0041g01090.t01 Wine grape cytosol 28.19 26.7
Bra014991.1-P Field mustard cytosol 26.06 26.49
AT3G23880.1 Thale cress cytosol 25.53 26.37
PGSC0003DMT400016057 Potato cytosol 25.53 25.74
PGSC0003DMT400016099 Potato cytosol 24.73 25.27
PGSC0003DMT400080293 Potato nucleus 16.49 24.41
PGSC0003DMT400030295 Potato cytosol 12.77 24.24
Protein Annotations
EnsemblPlants:PGSC0003DMT400080382EnsemblPlantsGene:PGSC0003DMG400031300Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR44355PANTHER:PTHR44355:SF1
PFAM:PF00646PFscan:PS50181PGSC:PGSC0003DMG400031300SEG:segSMART:SM00256SUPFAM:SSF81383
TIGRFAMs:TIGR01640UniParc:UPI00029489B6UniProt:M1D3F7MapMan:19.2.2.8.1.4.6::
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031300]
Coordinates
chr9:+:58849836..58850966
Molecular Weight (calculated)
43387.1 Da
IEP (calculated)
5.198
GRAVY (calculated)
-0.297
Length
376 amino acids
Sequence
(BLAST)
001: MEMQDSILVL PEELVIEILL KLPIKSLLKF KCISKSWLAL ISSSEFVKTH LRLNANNKEY THHKVMMRCI SNYGFKSCSL TSLFNESCVT EAKDLDYPTK
101: SYGWERDRYD VSILGSINGL ICLVNDDKEL FLWNPSIRKH KKLPDPRTSL PPQGGPRRAY GFGYDEVHDD YKVVIFNEIE TNMIREFEVK MYSLKSDSWR
201: CVDDCPRMAQ FNVSGKFVNG KLHWDSTSTY WKSDLATFCD GYRDPNIISI DLADEKWGEM DQPCDDVGEI ALRVGVLGSD LSVLCNCNML LVDVWVMKEY
301: GVKESWTKMF TIKYTPRSGY LGQRCLHMSN EGEILVVIKG EFMIYNPKDD SLRYSEVINS DKWDANEIYV ESLVCP
Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.