Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 99.46 | 99.46 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 91.08 | 90.84 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 56.49 | 62.39 |
| PGSC0003DMT400076216 | Potato | cytosol | 54.05 | 51.41 |
| PGSC0003DMT400034123 | Potato | golgi | 35.14 | 35.42 |
| PGSC0003DMT400080382 | Potato | golgi | 32.43 | 31.91 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 32.43 | 31.33 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 31.08 | 31.08 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.51 | 30.54 |
| PGSC0003DMT400095263 | Potato | cytosol | 22.43 | 30.51 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 26.76 | 30.18 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 30.54 | 29.89 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 26.49 | 29.88 |
| PGSC0003DMT400055337 | Potato | plastid | 32.7 | 29.8 |
| PGSC0003DMT400076274 | Potato | cytosol | 31.08 | 29.72 |
| PGSC0003DMT400031977 | Potato | cytosol | 31.62 | 29.47 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 25.41 | 29.47 |
| PGSC0003DMT400076275 | Potato | nucleus | 31.89 | 29.35 |
| KRH11341 | Soybean | cytosol, plastid | 31.08 | 29.26 |
| PGSC0003DMT400016504 | Potato | cytosol | 30.27 | 29.02 |
| PGSC0003DMT400092235 | Potato | cytosol | 25.95 | 29.0 |
| PGSC0003DMT400080369 | Potato | nucleus | 30.81 | 28.57 |
| PGSC0003DMT400059327 | Potato | cytosol | 28.38 | 28.46 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 30.0 | 28.32 |
| PGSC0003DMT400025788 | Potato | cytosol | 30.0 | 28.32 |
| PGSC0003DMT400009709 | Potato | cytosol | 28.92 | 28.31 |
| PGSC0003DMT400009785 | Potato | cytosol | 28.92 | 28.23 |
| PGSC0003DMT400096925 | Potato | cytosol | 19.19 | 28.17 |
| PGSC0003DMT400096151 | Potato | cytosol | 30.27 | 28.14 |
| PGSC0003DMT400076284 | Potato | cytosol | 31.89 | 27.83 |
| PGSC0003DMT400030295 | Potato | cytosol | 14.86 | 27.78 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 26.76 | 27.58 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 29.46 | 27.25 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 17.84 | 27.16 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 27.3 | 27.15 |
| PGSC0003DMT400076282 | Potato | nucleus | 11.35 | 26.58 |
| PGSC0003DMT400012000 | Potato | plastid | 26.22 | 26.22 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 27.84 | 26.21 |
| PGSC0003DMT400090333 | Potato | cytosol | 21.89 | 26.13 |
| PGSC0003DMT400067303 | Potato | extracellular | 25.68 | 25.96 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 27.84 | 25.94 |
| PGSC0003DMT400085500 | Potato | cytosol | 26.76 | 25.85 |
| PGSC0003DMT400058829 | Potato | cytosol | 25.14 | 25.55 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 24.32 | 25.5 |
| PGSC0003DMT400094202 | Potato | cytosol | 19.73 | 25.44 |
| PGSC0003DMT400016099 | Potato | cytosol | 25.14 | 25.27 |
| PGSC0003DMT400016096 | Potato | cytosol | 14.05 | 25.12 |
| PGSC0003DMT400059330 | Potato | extracellular | 25.41 | 24.87 |
| PGSC0003DMT400097507 | Potato | cytosol | 15.95 | 24.79 |
| PGSC0003DMT400090382 | Potato | cytosol | 25.68 | 24.74 |
| PGSC0003DMT400016057 | Potato | cytosol | 24.86 | 24.66 |
| AT3G23880.1 | Thale cress | cytosol | 22.97 | 23.35 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 11.89 | 23.28 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 30.81 | 23.17 |
| Bra014991.1-P | Field mustard | cytosol | 22.97 | 22.97 |
| KRH72048 | Soybean | cytosol | 21.89 | 22.95 |
| PGSC0003DMT400045556 | Potato | cytosol | 28.65 | 22.94 |
| PGSC0003DMT400046369 | Potato | cytosol | 24.86 | 22.77 |
| PGSC0003DMT400080292 | Potato | cytosol | 12.16 | 22.73 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 10.81 | 22.22 |
| PGSC0003DMT400059329 | Potato | vacuole | 24.05 | 22.19 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 16.49 | 22.1 |
| PGSC0003DMT400093810 | Potato | plastid | 15.41 | 20.36 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 22.7 | 20.1 |
| PGSC0003DMT400053926 | Potato | cytosol | 14.05 | 19.77 |
| PGSC0003DMT400088797 | Potato | cytosol | 12.97 | 19.51 |
| PGSC0003DMT400059334 | Potato | plastid | 17.84 | 18.33 |
| PGSC0003DMT400080293 | Potato | nucleus | 11.35 | 16.54 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:107059266 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M0ZV52 | PFAM:PF00646 |
| EnsemblPlantsGene:PGSC0003DMG400003427 | PGSC:PGSC0003DMG400003427 | EnsemblPlants:PGSC0003DMT400008824 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002962947 | RefSeq:XP_015161245.1 | SEG:seg |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003427]
Coordinates
chr00:+:29531312..29533201
Molecular Weight (calculated)
41231.3 Da
IEP (calculated)
6.419
GRAVY (calculated)
-0.039
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIPTLPQD IIVEILIRLP LKILLKFRSV SKSWLSLLSD SQFHKTHINF SMNNPKFTDY TLAAVPTVSG LGKICHVYTI RSENSSVIVS KHECPSKTLS
101: LSAWILGSCN GLICLTTDSF NLMLLNPCTG KFNVFPDLMI EYEVGDGGVH IRYGFGYDAY AEDYKVVKMF SFPRIGNEGR RHVNMVSVYS LKGNSWSSIQ
201: GFDSGYVNGN VGVFANGVLH WEGCYDYVLG GISSEIVTLD LAKERYGRIA LPRYEGGGIH WTLGESRGRL VACCNYESNK ADIWVMKEYG VEKTWTKLVT
301: ISSPDDGRVN ISPLFVAENG DEVLVKLGTE VTLYNSRNAS FKRIADYVST DDFLQVQVAT YLESLASPHS
101: LSAWILGSCN GLICLTTDSF NLMLLNPCTG KFNVFPDLMI EYEVGDGGVH IRYGFGYDAY AEDYKVVKMF SFPRIGNEGR RHVNMVSVYS LKGNSWSSIQ
201: GFDSGYVNGN VGVFANGVLH WEGCYDYVLG GISSEIVTLD LAKERYGRIA LPRYEGGGIH WTLGESRGRL VACCNYESNK ADIWVMKEYG VEKTWTKLVT
301: ISSPDDGRVN ISPLFVAENG DEVLVKLGTE VTLYNSRNAS FKRIADYVST DDFLQVQVAT YLESLASPHS
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.