Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080292 | Potato | cytosol | 47.91 | 63.64 |
| PGSC0003DMT400093810 | Potato | plastid | 51.33 | 48.21 |
| PGSC0003DMT400088797 | Potato | cytosol | 42.59 | 45.53 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 29.28 | 42.78 |
| PGSC0003DMT400059334 | Potato | plastid | 52.09 | 38.06 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 37.64 | 35.87 |
| PGSC0003DMT400059329 | Potato | vacuole | 48.67 | 31.92 |
| PGSC0003DMT400090382 | Potato | cytosol | 46.39 | 31.77 |
| PGSC0003DMT400059327 | Potato | cytosol | 42.97 | 30.62 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 46.01 | 28.95 |
| PGSC0003DMT400067303 | Potato | extracellular | 39.92 | 28.69 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 39.16 | 27.69 |
| PGSC0003DMT400097507 | Potato | cytosol | 21.67 | 23.95 |
| PGSC0003DMT400059330 | Potato | extracellular | 34.22 | 23.81 |
| PGSC0003DMT400094202 | Potato | cytosol | 25.1 | 23.0 |
| PGSC0003DMT400090333 | Potato | cytosol | 27.0 | 22.9 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 30.42 | 22.66 |
| PGSC0003DMT400092235 | Potato | cytosol | 28.52 | 22.66 |
| PGSC0003DMT400095263 | Potato | cytosol | 23.19 | 22.43 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 26.62 | 21.34 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 25.48 | 21.0 |
| PGSC0003DMT400016504 | Potato | cytosol | 30.42 | 20.73 |
| PGSC0003DMT400055337 | Potato | plastid | 31.56 | 20.44 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 29.28 | 20.37 |
| PGSC0003DMT400080382 | Potato | golgi | 28.9 | 20.21 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.63 | 20.16 |
| PGSC0003DMT400080293 | Potato | nucleus | 19.39 | 20.08 |
| PGSC0003DMT400009785 | Potato | cytosol | 28.9 | 20.05 |
| PGSC0003DMT400076275 | Potato | nucleus | 30.42 | 19.9 |
| PGSC0003DMT400096925 | Potato | cytosol | 19.01 | 19.84 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 30.04 | 19.75 |
| PGSC0003DMT400076282 | Potato | nucleus | 11.79 | 19.62 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 28.9 | 19.39 |
| PGSC0003DMT400076284 | Potato | cytosol | 30.8 | 19.1 |
| PGSC0003DMT400096151 | Potato | cytosol | 28.9 | 19.1 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 26.62 | 18.92 |
| PGSC0003DMT400031977 | Potato | cytosol | 28.52 | 18.89 |
| PGSC0003DMT400009709 | Potato | cytosol | 27.0 | 18.78 |
| PGSC0003DMT400080369 | Potato | nucleus | 27.38 | 18.05 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 22.43 | 17.61 |
| PGSC0003DMT400045556 | Potato | cytosol | 30.8 | 17.53 |
| PGSC0003DMT400085500 | Potato | cytosol | 25.48 | 17.49 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 20.91 | 16.77 |
| Bra014991.1-P | Field mustard | cytosol | 23.57 | 16.76 |
| PGSC0003DMT400012000 | Potato | plastid | 23.57 | 16.76 |
| PGSC0003DMT400076216 | Potato | cytosol | 24.71 | 16.71 |
| PGSC0003DMT400076274 | Potato | cytosol | 24.33 | 16.54 |
| PGSC0003DMT400016096 | Potato | cytosol | 12.93 | 16.43 |
| AT3G23880.1 | Thale cress | cytosol | 22.43 | 16.21 |
| KRH72048 | Soybean | cytosol | 21.29 | 15.86 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 22.81 | 15.67 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 21.29 | 15.6 |
| KRH11341 | Soybean | cytosol, plastid | 23.19 | 15.52 |
| PGSC0003DMT400030295 | Potato | cytosol | 11.41 | 15.15 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 27.76 | 14.84 |
| KRH20939 | Soybean | cytosol, mitochondrion | 22.81 | 14.78 |
| PGSC0003DMT400034123 | Potato | golgi | 20.53 | 14.71 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 10.27 | 14.29 |
| PGSC0003DMT400058829 | Potato | cytosol | 19.77 | 14.29 |
| PGSC0003DMT400025788 | Potato | cytosol | 21.29 | 14.29 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 19.77 | 14.05 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 19.77 | 14.05 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 20.53 | 13.74 |
| PGSC0003DMT400016057 | Potato | cytosol | 19.01 | 13.4 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 18.63 | 12.34 |
| PGSC0003DMT400016099 | Potato | cytosol | 16.73 | 11.96 |
| PGSC0003DMT400046369 | Potato | cytosol | 16.35 | 10.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400053926 | EnsemblPlantsGene:PGSC0003DMG400020922 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| PFAM:PF07734 | PGSC:PGSC0003DMG400020922 | TIGRFAMs:TIGR01640 | UniParc:UPI000295690F | UniProt:M1BVM7 | MapMan:35.2 |
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020922]
Coordinates
chr10:+:40889611..40891759
Molecular Weight (calculated)
29787.3 Da
IEP (calculated)
4.309
GRAVY (calculated)
-0.059
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPALSSSI VGTANGLICL YDDKREIYIW NPTISKSKKL LNLPWDSFFY MKYGFGLDES RDDYKALFID DCVEESDLSY VVNIYSLRTD SWKTLYDQLK
101: GVFLINLLAK FVNGKLYWTA STSFCDFNVL KIISFDVADE TWGSLELPIC GEDNFNIKLG VVGSELSLIY TANLVATTSD VWILKNSGLH LEHTVDVVGC
201: DPAKIYVESI VNPLRFLVEN QEKDLASTRG LCRCRQSSDA RYAGDADKFI ADGMEREYME ECF
101: GVFLINLLAK FVNGKLYWTA STSFCDFNVL KIISFDVADE TWGSLELPIC GEDNFNIKLG VVGSELSLIY TANLVATTSD VWILKNSGLH LEHTVDVVGC
201: DPAKIYVESI VNPLRFLVEN QEKDLASTRG LCRCRQSSDA RYAGDADKFI ADGMEREYME ECF
001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
Arabidopsis Description
F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.