Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 87.9 | 87.9 |
| PGSC0003DMT400059330 | Potato | extracellular | 80.65 | 79.37 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 72.04 | 61.89 |
| PGSC0003DMT400080293 | Potato | nucleus | 35.22 | 51.57 |
| Solyc05g007400.1.1 | Tomato | cytosol | 49.46 | 48.42 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 42.74 | 40.87 |
| Solyc09g091710.1.1 | Tomato | nucleus | 44.09 | 40.8 |
| Solyc05g007360.1.1 | Tomato | extracellular | 42.74 | 39.65 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 42.74 | 39.36 |
| Solyc10g068340.1.1 | Tomato | cytosol | 26.08 | 37.31 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 37.63 | 36.75 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 37.9 | 36.53 |
| Solyc02g033040.2.1 | Tomato | nucleus | 33.06 | 36.18 |
| Solyc01g067030.2.1 | Tomato | extracellular | 33.87 | 34.15 |
| Solyc10g075010.1.1 | Tomato | extracellular | 31.99 | 33.52 |
| Solyc10g052710.1.1 | Tomato | cytosol | 33.87 | 32.98 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 34.68 | 31.85 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 31.99 | 31.07 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 35.22 | 29.98 |
| Solyc09g091690.1.1 | Tomato | cytosol | 30.65 | 29.38 |
| KRH20939 | Soybean | cytosol, mitochondrion | 31.99 | 29.31 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 27.15 | 28.94 |
| KRH11341 | Soybean | cytosol, plastid | 30.11 | 28.5 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 27.96 | 28.03 |
| Solyc09g091220.1.1 | Tomato | cytosol | 29.84 | 27.89 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 26.61 | 27.58 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 17.74 | 27.16 |
| KRH72048 | Soybean | cytosol | 24.19 | 25.5 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.88 | 25.45 |
| Bra014991.1-P | Field mustard | cytosol | 25.0 | 25.14 |
| Solyc01g008660.2.1 | Tomato | cytosol | 23.12 | 25.0 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.08 | 24.43 |
| AT3G23880.1 | Thale cress | cytosol | 23.66 | 24.18 |
| Solyc12g099550.1.1 | Tomato | cytosol | 21.24 | 23.44 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | UniProt:K4BWS8 | PFAM:PF00646 |
| PFAM:PF07734 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF50965 |
| SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc05g007530.1 | EnsemblPlants:Solyc05g007530.1.1 | TIGRFAMs:TIGR01640 | UniParc:UPI0002765CAA | : |
Description
No Description!
Coordinates
chr5:-:2085583..2086701
Molecular Weight (calculated)
41908.2 Da
IEP (calculated)
4.754
GRAVY (calculated)
-0.012
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESIISVLP HEIIVEILLK VPPKSLLKFT CVSKSWLELI SSAKFIKDHL KLTANDKEYS HHRIIFQESA CNFKVCCLPP MLNKERGTEL FDIGSPMENP
101: TIYTWSVGSV NGLICLYSKI EEPVLWNPAI NKSKKLPAFG ANLKNSCSYH LKYGFGYDET RDDYTVVVIQ CIYEDNGSYD TVVNVYSLRA DSWRTINKFQ
201: GNFLVNSPSK FIDGKLYWAL SADVDTFNMC NIISLDLANE TWGRLELPDS YGKSSYPLAL GVVGGHLSVL CLNCIEGTNS DVWIMKDSGD EVSWNKIFTI
301: NHPKDLGEFI FFTSIFSVPC YKSNKDEILL LLPPAIMTYN GSTRQVEVAD QFEECAAAEI YVESLVDPLL IS
101: TIYTWSVGSV NGLICLYSKI EEPVLWNPAI NKSKKLPAFG ANLKNSCSYH LKYGFGYDET RDDYTVVVIQ CIYEDNGSYD TVVNVYSLRA DSWRTINKFQ
201: GNFLVNSPSK FIDGKLYWAL SADVDTFNMC NIISLDLANE TWGRLELPDS YGKSSYPLAL GVVGGHLSVL CLNCIEGTNS DVWIMKDSGD EVSWNKIFTI
301: NHPKDLGEFI FFTSIFSVPC YKSNKDEILL LLPPAIMTYN GSTRQVEVAD QFEECAAAEI YVESLVDPLL IS
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.